Difference between revisions of "RXN-12615"

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(Created page with "Category:reaction == Reaction MTHFCx == * direction: ** left-to-right * common-name: ** methenyltetrahydrofolate cyclohydrolase == Reaction formula == * 1.0 10-FORMYL-TH...")
(Created page with "Category:reaction == Reaction PYRUVATE-CARBOXYLASE-RXN == * direction: ** left-to-right * common-name: ** pyruvate carboxylase * ec-number: ** [http://enzyme.expasy.org/EC...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction MTHFCx ==
+
== Reaction PYRUVATE-CARBOXYLASE-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** methenyltetrahydrofolate cyclohydrolase
+
** pyruvate carboxylase
 +
* ec-number:
 +
** [http://enzyme.expasy.org/EC/6.4.1.1 ec-6.4.1.1]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1.0 [[10-FORMYL-THF]][x] '''+''' 1.0 [[PROTON]][x] '''=>''' 1.0 [[5-10-METHENYL-THF]][x] '''+''' 1.0 [[WATER]][x]
+
* 1 [[ATP]][c] '''+''' 1 [[HCO3]][c] '''+''' 1 [[PYRUVATE]][c] '''=>''' 1 [[ADP]][c] '''+''' 1 [[OXALACETIC_ACID]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[Pi]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ17385]]
+
* Gene: [[SJ12670]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
+
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ00485]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 +
* [[PWY-5750]], itaconate biosynthesis I:
 +
** '''3''' reactions found over '''2''' reactions in the full pathway
 +
* [[P42-PWY]], incomplete reductive TCA cycle:
 +
** '''5''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY66-399]], gluconeogenesis III:
 +
** '''11''' reactions found over '''12''' reactions in the full pathway
 +
* [[PWY-6146]], Methanobacterium thermoautotrophicum biosynthetic metabolism:
 +
** '''9''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-6142]], gluconeogenesis II (Methanobacterium thermoautotrophicum):
 +
** '''10''' reactions found over '''13''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
+
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=20845 20845]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R00344 R00344]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/Q05920 Q05920]
 +
** [http://www.uniprot.org/uniprot/Q9PNQ4 Q9PNQ4]
 +
** [http://www.uniprot.org/uniprot/P95127 P95127]
 +
** [http://www.uniprot.org/uniprot/Q9PP00 Q9PP00]
 +
** [http://www.uniprot.org/uniprot/Q9CHQ7 Q9CHQ7]
 +
** [http://www.uniprot.org/uniprot/Q9KWU4 Q9KWU4]
 +
** [http://www.uniprot.org/uniprot/P11498 P11498]
 +
** [http://www.uniprot.org/uniprot/P52873 P52873]
 +
** [http://www.uniprot.org/uniprot/P11154 P11154]
 +
** [http://www.uniprot.org/uniprot/P32327 P32327]
 +
** [http://www.uniprot.org/uniprot/O17732 O17732]
 +
** [http://www.uniprot.org/uniprot/Q9UUE1 Q9UUE1]
 +
** [http://www.uniprot.org/uniprot/Q16921 Q16921]
 +
** [http://www.uniprot.org/uniprot/Q9XBJ1 Q9XBJ1]
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=methenyltetrahydrofolate cyclohydrolase}}
+
{{#set: common-name=pyruvate carboxylase}}
−
{{#set: nb gene associated=1}}
+
{{#set: ec-number=ec-6.4.1.1}}
−
{{#set: nb pathway associated=0}}
+
{{#set: nb gene associated=2}}
−
{{#set: reconstruction category=orthology}}
+
{{#set: nb pathway associated=5}}
−
{{#set: reconstruction tool=pantograph}}
+
{{#set: reconstruction category=annotation|orthology}}
 +
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina}}
+
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}

Revision as of 19:04, 14 January 2021

Reaction PYRUVATE-CARBOXYLASE-RXN

  • direction:
    • left-to-right
  • common-name:
    • pyruvate carboxylase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-5750, itaconate biosynthesis I:
    • 3 reactions found over 2 reactions in the full pathway
  • P42-PWY, incomplete reductive TCA cycle:
    • 5 reactions found over 7 reactions in the full pathway
  • PWY66-399, gluconeogenesis III:
    • 11 reactions found over 12 reactions in the full pathway
  • PWY-6146, Methanobacterium thermoautotrophicum biosynthetic metabolism:
    • 9 reactions found over 2 reactions in the full pathway
  • PWY-6142, gluconeogenesis II (Methanobacterium thermoautotrophicum):
    • 10 reactions found over 13 reactions in the full pathway

Reconstruction information

External links





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