Difference between revisions of "RXN-12726"

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(Created page with "Category:reaction == Reaction RXN-11026 == * direction: ** left-to-right * common-name: ** acyl-coa oxidase * ec-number: ** [http://enzyme.expasy.org/EC/1.3.3.6 ec-1.3.3.6...")
(Created page with "Category:reaction == Reaction RXN66-321 == * direction: ** left-to-right * ec-number: ** [http://enzyme.expasy.org/EC/1.3.1.72 ec-1.3.1.72] == Reaction formula == * 1 5-...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction RXN-11026 ==
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== Reaction RXN66-321 ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
−
* common-name:
 
−
** acyl-coa oxidase
 
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/1.3.3.6 ec-1.3.3.6]
+
** [http://enzyme.expasy.org/EC/1.3.1.72 ec-1.3.1.72]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[OXYGEN-MOLECULE]][c] '''+''' 1 [[Saturated-Fatty-Acyl-CoA]][c] '''=>''' 1 [[HYDROGEN-PEROXIDE]][c] '''+''' 1 [[TRANS-D2-ENOYL-COA]][c]
+
* 1 [[5-ALPHA-CHOLESTA-724-DIEN-3-BETA-OL]][c] '''+''' 1 [[NADPH]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[CPD-4186]][c] '''+''' 1 [[NADP]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ07452]]
 
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** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
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* Gene: [[SJ07451]]
 
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** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
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** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
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* Gene: [[SJ13468]]
 
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** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ03090]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ19669]]
 
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** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-7007]], methyl ketone biosynthesis (engineered):
+
* [[PWY66-341]], cholesterol biosynthesis I:
−
** '''4''' reactions found over '''6''' reactions in the full pathway
+
** '''14''' reactions found over '''18''' reactions in the full pathway
−
* [[PWY-7288]], fatty acid β-oxidation VII (yeast peroxisome):
 
−
** '''4''' reactions found over '''5''' reactions in the full pathway
 
−
* [[PWY-5136]], fatty acid β-oxidation II (plant peroxisome):
 
−
** '''5''' reactions found over '''5''' reactions in the full pathway
 
−
* [[PWY66-391]], fatty acid β-oxidation VI (mammalian peroxisome):
 
−
** '''6''' reactions found over '''7''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
+
* category: [[gap-filling]]; source: [[gapfilling_solution_with_meneco_draft_medium]]; tool: [[meneco]]; comment: added for gapfilling
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* METANETX-RXN : MNXR109773
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* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=38960 38960]
 
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/O65202 O65202]
 
−
** [http://www.uniprot.org/uniprot/O65201 O65201]
 
−
** [http://www.uniprot.org/uniprot/O23977 O23977]
 
−
** [http://www.uniprot.org/uniprot/P13711 P13711]
 
−
** [http://www.uniprot.org/uniprot/P34355 P34355]
 
−
** [http://www.uniprot.org/uniprot/P07872 P07872]
 
−
** [http://www.uniprot.org/uniprot/P11356 P11356]
 
−
** [http://www.uniprot.org/uniprot/P06598 P06598]
 
−
** [http://www.uniprot.org/uniprot/Q00468 Q00468]
 
−
** [http://www.uniprot.org/uniprot/Q15067 Q15067]
 
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R00388 R00388]
+
** [http://www.genome.jp/dbget-bin/www_bget?R05703 R05703]
−
* PIR:
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A54942 A54942]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=B54942 B54942]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=I38095 I38095]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=JC4563 JC4563]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=OXCKAX OXCKAX]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=OXCKP2 OXCKP2]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=OXCKPM OXCKPM]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=OXCKX OXCKX]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=OXCKX4 OXCKX4]
 
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=OXCKX5 OXCKX5]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=OXRTA1 OXRTA1]
 
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=OXRTA2 OXRTA2]
 
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S40722 S40722]
 
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S64224 S64224]
 
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T04418 T04418]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T52120 T52120]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T52121 T52121]
 
−
</div>
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=acyl-coa oxidase}}
+
{{#set: ec-number=ec-1.3.1.72}}
−
{{#set: ec-number=ec-1.3.3.6}}
+
{{#set: nb gene associated=0}}
−
{{#set: nb gene associated=5}}
+
{{#set: nb pathway associated=1}}
−
{{#set: nb pathway associated=4}}
+
{{#set: reconstruction category=gap-filling}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction tool=meneco}}
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
+
{{#set: reconstruction comment=added for gapfilling}}
−
{{#set: reconstruction comment=n.a}}
+
{{#set: reconstruction source=gapfilling_solution_with_meneco_draft_medium}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
 

Revision as of 08:33, 15 March 2021

Reaction RXN66-321

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY66-341, cholesterol biosynthesis I:
    • 14 reactions found over 18 reactions in the full pathway

Reconstruction information

External links

  • METANETX-RXN : MNXR109773
  • LIGAND-RXN:





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