Difference between revisions of "RXN-12727"

From metabolic_network
Jump to navigation Jump to search
(Created page with "Category:reaction == Reaction HEMN-RXN == * direction: ** left-to-right * ec-number: ** [http://enzyme.expasy.org/EC/1.3.98.3 ec-1.3.98.3] == Reaction formula == * 1 COP...")
(Created page with "Category:reaction == Reaction RXN-12727 == * direction: ** reversible * ec-number: ** [http://enzyme.expasy.org/EC/5.4.99.45 ec-5.4.99.45] == Reaction formula == * 1 tRN...")
 
(6 intermediate revisions by 3 users not shown)
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
== Reaction HEMN-RXN ==
+
== Reaction RXN-12727 ==
 
* direction:
 
* direction:
** left-to-right
+
** reversible
 
* ec-number:
 
* ec-number:
** [http://enzyme.expasy.org/EC/1.3.98.3 ec-1.3.98.3]
+
** [http://enzyme.expasy.org/EC/5.4.99.45 ec-5.4.99.45]
 
== Reaction formula ==
 
== Reaction formula ==
* 1 [[COPROPORPHYRINOGEN_III]][c] '''+''' 2 [[S-ADENOSYLMETHIONINE]][c] '''=>''' 2 [[CARBON-DIOXIDE]][c] '''+''' 2 [[CH33ADO]][c] '''+''' 2 [[MET]][c] '''+''' 1 [[PROTOPORPHYRINOGEN]][c]
+
* 1 [[tRNA-uridine-38-39]][c] '''<=>''' 1 [[tRNA-pseudouridine-38-39]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
* Gene: [[SJ03663]]
+
* Gene: [[SJ10070]]
** Category: [[orthology]]
+
** Category: [[annotation]]
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
* Gene: [[SJ20556]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
* Gene: [[SJ05457]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
* Gene: [[SJ16512]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
* Gene: [[SJ06609]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
* [[PWY-5531]], 3,8-divinyl-chlorophyllide a biosynthesis II (anaerobic):
 
** '''4''' reactions found over '''9''' reactions in the full pathway
 
* [[HEMESYN2-PWY]], heme b biosynthesis II (oxygen-independent):
 
** '''3''' reactions found over '''4''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
+
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
* RHEA:
+
* METANETX-RXN : MNXR117716
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15426 15426]
+
{{#set: direction=reversible}}
* LIGAND-RXN:
+
{{#set: ec-number=ec-5.4.99.45}}
** [http://www.genome.jp/dbget-bin/www_bget?R06895 R06895]
+
{{#set: nb gene associated=1}}
{{#set: direction=left-to-right}}
+
{{#set: nb pathway associated=0}}
{{#set: ec-number=ec-1.3.98.3}}
+
{{#set: reconstruction category=annotation}}
{{#set: nb gene associated=5}}
+
{{#set: reconstruction tool=pathwaytools}}
{{#set: nb pathway associated=2}}
 
{{#set: reconstruction category=orthology}}
 
{{#set: reconstruction tool=pantograph}}
 
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|output_pantograph_arabidopsis_thaliana}}
+
{{#set: reconstruction source=saccharina_japonica_genome}}

Latest revision as of 11:19, 18 March 2021

Reaction RXN-12727

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links

  • METANETX-RXN : MNXR117716