Difference between revisions of "RXN-12817"

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(Created page with "Category:pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6164 PWY-6164] == * taxonomic-range: ** [http://metacyc.org/META/NEW-IMAGE?object=tax-3041 tax-30...")
(Created page with "Category:reaction == Reaction 5-FORMYL-THF-CYCLO-LIGASE-RXN == * direction: ** left-to-right * common-name: ** 5-formyltetrahydrofolate cyclo-ligase * ec-number: ** [http:...")
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[[Category:pathway]]
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[[Category:reaction]]
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6164 PWY-6164] ==
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== Reaction 5-FORMYL-THF-CYCLO-LIGASE-RXN ==
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* taxonomic-range:
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* direction:
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** [http://metacyc.org/META/NEW-IMAGE?object=tax-3041 tax-3041]
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** left-to-right
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** [http://metacyc.org/META/NEW-IMAGE?object=tax-2763 tax-2763]
 
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** [http://metacyc.org/META/NEW-IMAGE?object=tax-287987 tax-287987]
 
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** [http://metacyc.org/META/NEW-IMAGE?object=tax-5204 tax-5204]
 
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** [http://metacyc.org/META/NEW-IMAGE?object=tax-2836 tax-2836]
 
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** [http://metacyc.org/META/NEW-IMAGE?object=tax-4762 tax-4762]
 
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** [http://metacyc.org/META/NEW-IMAGE?object=tax-4890 tax-4890]
 
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** [http://metacyc.org/META/NEW-IMAGE?object=tax-5794 tax-5794]
 
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** [http://metacyc.org/META/NEW-IMAGE?object=tax-33090 tax-33090]
 
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** [http://metacyc.org/META/NEW-IMAGE?object=tax-2 tax-2]
 
 
* common-name:
 
* common-name:
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** 3-dehydroquinate biosynthesis i
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** 5-formyltetrahydrofolate cyclo-ligase
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== Reaction(s) found ==
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* ec-number:
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* [[3-DEHYDROQUINATE-SYNTHASE-RXN]]
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** [http://enzyme.expasy.org/EC/6.3.3.2 ec-6.3.3.2]
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* [[DAHPSYN-RXN]]
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== Reaction formula ==
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== Reaction(s) not found ==
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* 1 [[ATP]][c] '''+''' 1 [[N5-Formyl-THF-Glu-N]][c] '''=>''' 1 [[5-10-METHENYL-THF-GLU-N]][c] '''+''' 1 [[ADP]][c] '''+''' 1 [[Pi]][c]
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All reactions of this pathways are in present
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== Gene(s) associated with this reaction  ==
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{{#set: taxonomic-range=tax-287987|tax-4890|tax-3041|tax-5204|tax-33090|tax-2763|tax-4762|tax-2836|tax-5794|tax-2}}
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* Gene: [[SJ02064]]
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{{#set: common-name=3-dehydroquinate biosynthesis i}}
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** Category: [[annotation]]
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{{#set: nb reaction found=2}}
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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{{#set: completion rate=1.0}}
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** Category: [[orthology]]
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{{#set: nb total reaction=2}}
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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* Gene: [[SJ19600]]
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** Category: [[annotation]]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
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== Pathway(s) ==
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* [[PWY-3841]], folate transformations II (plants):
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** '''9''' reactions found over '''11''' reactions in the full pathway
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* [[PWY-2201]], folate transformations I:
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** '''9''' reactions found over '''10''' reactions in the full pathway
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* [[1CMET2-PWY]], folate transformations III (E. coli):
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** '''8''' reactions found over '''9''' reactions in the full pathway
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== Reconstruction information  ==
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* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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== External links  ==
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* RHEA:
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10489 10489]
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* LIGAND-RXN:
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** [http://www.genome.jp/dbget-bin/www_bget?R02301 R02301]
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* UNIPROT:
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** [http://www.uniprot.org/uniprot/P80405 P80405]
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** [http://www.uniprot.org/uniprot/P49914 P49914]
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{{#set: direction=left-to-right}}
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{{#set: common-name=5-formyltetrahydrofolate cyclo-ligase}}
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{{#set: ec-number=ec-6.3.3.2}}
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{{#set: nb gene associated=2}}
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{{#set: nb pathway associated=3}}
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{{#set: reconstruction category=annotation|orthology}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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{{#set: reconstruction comment=n.a}}
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{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}

Revision as of 20:44, 18 December 2020

Reaction 5-FORMYL-THF-CYCLO-LIGASE-RXN

  • direction:
    • left-to-right
  • common-name:
    • 5-formyltetrahydrofolate cyclo-ligase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-3841, folate transformations II (plants):
    • 9 reactions found over 11 reactions in the full pathway
  • PWY-2201, folate transformations I:
    • 9 reactions found over 10 reactions in the full pathway
  • 1CMET2-PWY, folate transformations III (E. coli):
    • 8 reactions found over 9 reactions in the full pathway

Reconstruction information

External links





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