Difference between revisions of "RXN-12850"

From metabolic_network
Jump to navigation Jump to search
(Created page with "Category:reaction == Reaction ExchangeSeed-CL- == * direction: ** reversible == Reaction formula == * 1.0 CL-[C-BOUNDARY] '''<=>''' 1.0 CL-[e] == Gene(s) associate...")
(Created page with "Category:reaction == Reaction 3.1.4.17-RXN == * direction: ** left-to-right * common-name: ** 3',5'-cyclic-nucleotide phosphodiesterase * ec-number: ** [http://enzyme.expa...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction ExchangeSeed-CL- ==
+
== Reaction 3.1.4.17-RXN ==
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
 +
* common-name:
 +
** 3',5'-cyclic-nucleotide phosphodiesterase
 +
* ec-number:
 +
** [http://enzyme.expasy.org/EC/3.1.4.17 ec-3.1.4.17]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1.0 [[CL-]][C-BOUNDARY] '''<=>''' 1.0 [[CL-]][e]
+
* 1 [[Cyclic-3-5-Nucleoside-Monophosphates]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[Nucleoside-Monophosphates]][c] '''+''' 1 [[PROTON]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
 +
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* Gene: [[SJ04705]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ18680]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ14703]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ03999]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ18679]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ09726]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ14526]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ10845]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
</div>
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[manual]]; source: [[import_from_medium]]; tool: [[curation]]; comment: added to manage seeds from boundary to extracellular compartment
+
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
{{#set: direction=reversible}}
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
{{#set: nb gene associated=0}}
+
* METANETX-RXN : MNXR115300
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=14654 14654]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R03259 R03259]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/P12019 P12019]
 +
** [http://www.uniprot.org/uniprot/Q56686 Q56686]
 +
** [http://www.uniprot.org/uniprot/P14099 P14099]
 +
** [http://www.uniprot.org/uniprot/Q01066 Q01066]
 +
** [http://www.uniprot.org/uniprot/Q01061 Q01061]
 +
** [http://www.uniprot.org/uniprot/P14100 P14100]
 +
** [http://www.uniprot.org/uniprot/Q01065 Q01065]
 +
** [http://www.uniprot.org/uniprot/P27815 P27815]
 +
** [http://www.uniprot.org/uniprot/O66909 O66909]
 +
** [http://www.uniprot.org/uniprot/P14270 P14270]
 +
** [http://www.uniprot.org/uniprot/O27755 O27755]
 +
** [http://www.uniprot.org/uniprot/P44685 P44685]
 +
** [http://www.uniprot.org/uniprot/P22434 P22434]
 +
** [http://www.uniprot.org/uniprot/P0AEW4 P0AEW4]
 +
** [http://www.uniprot.org/uniprot/O26280 O26280]
 +
** [http://www.uniprot.org/uniprot/O06629 O06629]
 +
** [http://www.uniprot.org/uniprot/O30241 O30241]
 +
** [http://www.uniprot.org/uniprot/P14644 P14644]
 +
** [http://www.uniprot.org/uniprot/P54748 P54748]
 +
** [http://www.uniprot.org/uniprot/Q13945 Q13945]
 +
** [http://www.uniprot.org/uniprot/Q01062 Q01062]
 +
** [http://www.uniprot.org/uniprot/P54827 P54827]
 +
** [http://www.uniprot.org/uniprot/Q01064 Q01064]
 +
** [http://www.uniprot.org/uniprot/Q9NP56 Q9NP56]
 +
** [http://www.uniprot.org/uniprot/O60658 O60658]
 +
** [http://www.uniprot.org/uniprot/P36599 P36599]
 +
** [http://www.uniprot.org/uniprot/P30645 P30645]
 +
** [http://www.uniprot.org/uniprot/Q45859 Q45859]
 +
** [http://www.uniprot.org/uniprot/P12252 P12252]
 +
** [http://www.uniprot.org/uniprot/P06776 P06776]
 +
** [http://www.uniprot.org/uniprot/Q08493 Q08493]
 +
** [http://www.uniprot.org/uniprot/Q63421 Q63421]
 +
</div>
 +
{{#set: direction=left-to-right}}
 +
{{#set: common-name=3',5'-cyclic-nucleotide phosphodiesterase}}
 +
{{#set: ec-number=ec-3.1.4.17}}
 +
{{#set: nb gene associated=8}}
 
{{#set: nb pathway associated=0}}
 
{{#set: nb pathway associated=0}}
−
{{#set: reconstruction category=manual}}
+
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction tool=curation}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
−
{{#set: reconstruction comment=added to manage seeds from boundary to extracellular compartment}}
+
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=import_from_medium}}
+
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}

Revision as of 08:33, 15 March 2021

Reaction 3.1.4.17-RXN

  • direction:
    • left-to-right
  • common-name:
    • 3',5'-cyclic-nucleotide phosphodiesterase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links





Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=RXN-12850&oldid=127580"