Difference between revisions of "RXN-12959"

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(Created page with "Category:reaction == Reaction AIRS-RXN == * direction: ** left-to-right * common-name: ** phosphoribosylformylglycinamide cyclo-ligase * ec-number: ** [http://enzyme.expas...")
(Created page with "Category:reaction == Reaction RXN-8032 == * direction: ** reversible * common-name: ** 3-ketopimelyl-coa thiolase * ec-number: ** [http://enzyme.expasy.org/EC/2.3.1 ec-2.3...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction AIRS-RXN ==
+
== Reaction RXN-8032 ==
 
* direction:
 
* direction:
−
** left-to-right
+
** reversible
 
* common-name:
 
* common-name:
−
** phosphoribosylformylglycinamide cyclo-ligase
+
** 3-ketopimelyl-coa thiolase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/6.3.3.1 ec-6.3.3.1]
+
** [http://enzyme.expasy.org/EC/2.3.1 ec-2.3.1]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[5-PHOSPHORIBOSYL-N-FORMYLGLYCINEAMIDINE]][c] '''+''' 1 [[ATP]][c] '''=>''' 1 [[5-PHOSPHORIBOSYL-5-AMINOIMIDAZOLE]][c] '''+''' 1 [[ADP]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[Pi]][c]
+
* 1 [[3-OXOPIMELOYL-COA]][c] '''+''' 1 [[CO-A]][c] '''<=>''' 1 [[ACETYL-COA]][c] '''+''' 1 [[GLUTARYL-COA]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ06408]]
+
* Gene: [[SJ15041]]
−
** Category: [[annotation]]
+
** Category: [[orthology]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-6277]], superpathway of 5-aminoimidazole ribonucleotide biosynthesis:
+
* [[P321-PWY]], benzoyl-CoA degradation III (anaerobic):
−
** '''6''' reactions found over '''5''' reactions in the full pathway
+
** '''1''' reactions found over '''9''' reactions in the full pathway
−
* [[PWY-6121]], 5-aminoimidazole ribonucleotide biosynthesis I:
+
* [[PWY-7401]], crotonate fermentation (to acetate and cyclohexane carboxylate):
−
** '''5''' reactions found over '''5''' reactions in the full pathway
+
** '''6''' reactions found over '''15''' reactions in the full pathway
−
* [[PWY-6122]], 5-aminoimidazole ribonucleotide biosynthesis II:
+
* [[CENTBENZCOA-PWY]], benzoyl-CoA degradation II (anaerobic):
−
** '''4''' reactions found over '''5''' reactions in the full pathway
+
** '''1''' reactions found over '''7''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
+
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=23033 23033]
 
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R04208 R04208]
+
** [http://www.genome.jp/dbget-bin/www_bget?R05586 R05586]
−
* UNIPROT:
+
{{#set: direction=reversible}}
−
** [http://www.uniprot.org/uniprot/P07244 P07244]
+
{{#set: common-name=3-ketopimelyl-coa thiolase}}
−
** [http://www.uniprot.org/uniprot/P12043 P12043]
+
{{#set: ec-number=ec-2.3.1}}
−
** [http://www.uniprot.org/uniprot/P21872 P21872]
 
−
** [http://www.uniprot.org/uniprot/P08178 P08178]
 
−
** [http://www.uniprot.org/uniprot/P00967 P00967]
 
−
** [http://www.uniprot.org/uniprot/P16340 P16340]
 
−
** [http://www.uniprot.org/uniprot/P22102 P22102]
 
−
** [http://www.uniprot.org/uniprot/Q57656 Q57656]
 
−
** [http://www.uniprot.org/uniprot/O66968 O66968]
 
−
** [http://www.uniprot.org/uniprot/Q9JUA2 Q9JUA2]
 
−
** [http://www.uniprot.org/uniprot/P43848 P43848]
 
−
** [http://www.uniprot.org/uniprot/Q9PME0 Q9PME0]
 
−
** [http://www.uniprot.org/uniprot/Q64737 Q64737]
 
−
** [http://www.uniprot.org/uniprot/P20772 P20772]
 
−
** [http://www.uniprot.org/uniprot/Q55422 Q55422]
 
−
** [http://www.uniprot.org/uniprot/P52424 P52424]
 
−
</div>
 
−
{{#set: direction=left-to-right}}
 
−
{{#set: common-name=phosphoribosylformylglycinamide cyclo-ligase}}
 
−
{{#set: ec-number=ec-6.3.3.1}}
 
 
{{#set: nb gene associated=1}}
 
{{#set: nb gene associated=1}}
 
{{#set: nb pathway associated=3}}
 
{{#set: nb pathway associated=3}}
−
{{#set: reconstruction category=annotation}}
+
{{#set: reconstruction category=orthology}}
−
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome}}
+
{{#set: reconstruction source=output_pantograph_arabidopsis_thaliana|output_pantograph_ectocarpus_siliculosus}}

Revision as of 18:59, 14 January 2021

Reaction RXN-8032

  • direction:
    • reversible
  • common-name:
    • 3-ketopimelyl-coa thiolase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • P321-PWY, benzoyl-CoA degradation III (anaerobic):
    • 1 reactions found over 9 reactions in the full pathway
  • PWY-7401, crotonate fermentation (to acetate and cyclohexane carboxylate):
    • 6 reactions found over 15 reactions in the full pathway
  • CENTBENZCOA-PWY, benzoyl-CoA degradation II (anaerobic):
    • 1 reactions found over 7 reactions in the full pathway

Reconstruction information

External links





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