Difference between revisions of "RXN-13185"

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(Created page with "Category:reaction == Reaction 2.7.11.4-RXN == * direction: ** reversible * ec-number: ** [http://enzyme.expasy.org/EC/2.7.11.4 ec-2.7.11.4] == Reaction formula == * 1 AT...")
(Created page with "Category:reaction == Reaction PEPCARBOX-RXN == * direction: ** left-to-right * common-name: ** phosphoenolpyruvate carboxylase * ec-number: ** [http://enzyme.expasy.org/EC...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction 2.7.11.4-RXN ==
+
== Reaction PEPCARBOX-RXN ==
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
 +
* common-name:
 +
** phosphoenolpyruvate carboxylase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.7.11.4 ec-2.7.11.4]
+
** [http://enzyme.expasy.org/EC/4.1.1.31 ec-4.1.1.31]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[ATP]][c] '''+''' 1 [[Branched-chain-2-keto-acid-deHase]][c] '''<=>''' 1 [[ADP]][c] '''+''' 1 [[Branched-chain-2-keto-acid-deH-P]][c]
+
* 1 [[HCO3]][c] '''+''' 1 [[PHOSPHO-ENOL-PYRUVATE]][c] '''=>''' 1 [[OXALACETIC_ACID]][c] '''+''' 1 [[Pi]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ09129]]
+
* Gene: [[SJ04004]]
−
** Category: [[orthology]]
+
** Category: [[annotation]]
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ12963]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ07990]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ11738]]
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 +
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* [[PWY-241]], C4 photosynthetic carbon assimilation cycle, NADP-ME type:
 +
** '''5''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY-5913]], partial TCA cycle (obligate autotrophs):
 +
** '''10''' reactions found over '''11''' reactions in the full pathway
 +
* [[PWY-6142]], gluconeogenesis II (Methanobacterium thermoautotrophicum):
 +
** '''10''' reactions found over '''13''' reactions in the full pathway
 +
* [[P23-PWY]], reductive TCA cycle I:
 +
** '''9''' reactions found over '''12''' reactions in the full pathway
 +
* [[PWYQT-4429]], CO2 fixation into oxaloacetate (anaplerotic):
 +
** '''2''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-6146]], Methanobacterium thermoautotrophicum biosynthetic metabolism:
 +
** '''9''' reactions found over '''2''' reactions in the full pathway
 +
* [[FERMENTATION-PWY]], mixed acid fermentation:
 +
** '''11''' reactions found over '''16''' reactions in the full pathway
 +
* [[PWY-7124]], ethylene biosynthesis V (engineered):
 +
** '''8''' reactions found over '''8''' reactions in the full pathway
 +
* [[PWY-6549]], L-glutamine biosynthesis III:
 +
** '''8''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-1622]], formaldehyde assimilation I (serine pathway):
 +
** '''6''' reactions found over '''13''' reactions in the full pathway
 +
* [[PWY-7117]], C4 photosynthetic carbon assimilation cycle, PEPCK type:
 +
** '''10''' reactions found over '''12''' reactions in the full pathway
 +
* [[PWY-7115]], C4 photosynthetic carbon assimilation cycle, NAD-ME type:
 +
** '''9''' reactions found over '''10''' reactions in the full pathway
 +
</div>
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
{{#set: direction=reversible}}
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
{{#set: ec-number=ec-2.7.11.4}}
+
* LIGAND-RXN:
−
{{#set: nb gene associated=4}}
+
** [http://www.genome.jp/dbget-bin/www_bget?R00345 R00345]
−
{{#set: nb pathway associated=0}}
+
* UNIPROT:
−
{{#set: reconstruction category=orthology}}
+
** [http://www.uniprot.org/uniprot/P28594 P28594]
−
{{#set: reconstruction tool=pantograph}}
+
** [http://www.uniprot.org/uniprot/P43920 P43920]
 +
** [http://www.uniprot.org/uniprot/P29195 P29195]
 +
** [http://www.uniprot.org/uniprot/P51059 P51059]
 +
** [http://www.uniprot.org/uniprot/P00864 P00864]
 +
** [http://www.uniprot.org/uniprot/P12880 P12880]
 +
** [http://www.uniprot.org/uniprot/P10490 P10490]
 +
** [http://www.uniprot.org/uniprot/P16097 P16097]
 +
** [http://www.uniprot.org/uniprot/P27154 P27154]
 +
** [http://www.uniprot.org/uniprot/P06516 P06516]
 +
** [http://www.uniprot.org/uniprot/Q43267 Q43267]
 +
** [http://www.uniprot.org/uniprot/Q41197 Q41197]
 +
** [http://www.uniprot.org/uniprot/P29194 P29194]
 +
** [http://www.uniprot.org/uniprot/P30694 P30694]
 +
** [http://www.uniprot.org/uniprot/P15804 P15804]
 +
** [http://www.uniprot.org/uniprot/Q43268 Q43268]
 +
** [http://www.uniprot.org/uniprot/Q01647 Q01647]
 +
** [http://www.uniprot.org/uniprot/Q01648 Q01648]
 +
** [http://www.uniprot.org/uniprot/Q02735 Q02735]
 +
** [http://www.uniprot.org/uniprot/Q02909 Q02909]
 +
** [http://www.uniprot.org/uniprot/Q42730 Q42730]
 +
** [http://www.uniprot.org/uniprot/Q41198 Q41198]
 +
** [http://www.uniprot.org/uniprot/P51063 P51063]
 +
** [http://www.uniprot.org/uniprot/Q40103 Q40103]
 +
** [http://www.uniprot.org/uniprot/Q40104 Q40104]
 +
** [http://www.uniprot.org/uniprot/Q40105 Q40105]
 +
** [http://www.uniprot.org/uniprot/Q40102 Q40102]
 +
** [http://www.uniprot.org/uniprot/Q41836 Q41836]
 +
** [http://www.uniprot.org/uniprot/O22118 O22118]
 +
** [http://www.uniprot.org/uniprot/O22119 O22119]
 +
** [http://www.uniprot.org/uniprot/O48623 O48623]
 +
** [http://www.uniprot.org/uniprot/Q42634 Q42634]
 +
** [http://www.uniprot.org/uniprot/O23946 O23946]
 +
** [http://www.uniprot.org/uniprot/O23947 O23947]
 +
** [http://www.uniprot.org/uniprot/Q84VW9 Q84VW9]
 +
</div>
 +
{{#set: direction=left-to-right}}
 +
{{#set: common-name=phosphoenolpyruvate carboxylase}}
 +
{{#set: ec-number=ec-4.1.1.31}}
 +
{{#set: nb gene associated=1}}
 +
{{#set: nb pathway associated=12}}
 +
{{#set: reconstruction category=annotation|orthology}}
 +
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}

Revision as of 19:03, 14 January 2021

Reaction PEPCARBOX-RXN

  • direction:
    • left-to-right
  • common-name:
    • phosphoenolpyruvate carboxylase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-241, C4 photosynthetic carbon assimilation cycle, NADP-ME type:
    • 5 reactions found over 6 reactions in the full pathway
  • PWY-5913, partial TCA cycle (obligate autotrophs):
    • 10 reactions found over 11 reactions in the full pathway
  • PWY-6142, gluconeogenesis II (Methanobacterium thermoautotrophicum):
    • 10 reactions found over 13 reactions in the full pathway
  • P23-PWY, reductive TCA cycle I:
    • 9 reactions found over 12 reactions in the full pathway
  • PWYQT-4429, CO2 fixation into oxaloacetate (anaplerotic):
    • 2 reactions found over 2 reactions in the full pathway
  • PWY-6146, Methanobacterium thermoautotrophicum biosynthetic metabolism:
    • 9 reactions found over 2 reactions in the full pathway
  • FERMENTATION-PWY, mixed acid fermentation:
    • 11 reactions found over 16 reactions in the full pathway
  • PWY-7124, ethylene biosynthesis V (engineered):
    • 8 reactions found over 8 reactions in the full pathway
  • PWY-6549, L-glutamine biosynthesis III:
    • 8 reactions found over 9 reactions in the full pathway
  • PWY-1622, formaldehyde assimilation I (serine pathway):
    • 6 reactions found over 13 reactions in the full pathway
  • PWY-7117, C4 photosynthetic carbon assimilation cycle, PEPCK type:
    • 10 reactions found over 12 reactions in the full pathway
  • PWY-7115, C4 photosynthetic carbon assimilation cycle, NAD-ME type:
    • 9 reactions found over 10 reactions in the full pathway

Reconstruction information

External links





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