Difference between revisions of "RXN-13186"

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(Created page with "Category:reaction == Reaction RXN-21834 == * direction: ** left-to-right == Reaction formula == * 1.0 CPD-23713[c] '''=>''' 1.0 CPD-23714[c] == Gene(s) associated...")
(Created page with "Category:reaction == Reaction PROTOPORGENOXI-RXN == * direction: ** left-to-right * common-name: ** protoporphyrinogen oxidase * ec-number: ** [http://enzyme.expasy.org/EC...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction RXN-21834 ==
+
== Reaction PROTOPORGENOXI-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 +
* common-name:
 +
** protoporphyrinogen oxidase
 +
* ec-number:
 +
** [http://enzyme.expasy.org/EC/1.3.3.4 ec-1.3.3.4]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1.0 [[CPD-23713]][c] '''=>''' 1.0 [[CPD-23714]][c]
+
* 3 [[OXYGEN-MOLECULE]][c] '''+''' 1 [[PROTOPORPHYRINOGEN]][c] '''=>''' 3 [[HYDROGEN-PEROXIDE]][c] '''+''' 1 [[PROTOPORPHYRIN_IX]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
 +
* Gene: [[SJ21798]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-8191]]:
+
* [[PWY-7159]], 3,8-divinyl-chlorophyllide a biosynthesis III (aerobic, light independent):
−
** '''15''' reactions found over '''n.a''' reactions in the full pathway
+
** '''5''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY0-1415]], superpathway of heme b biosynthesis from uroporphyrinogen-III:
 +
** '''5''' reactions found over '''4''' reactions in the full pathway
 +
* [[CHLOROPHYLL-SYN]], 3,8-divinyl-chlorophyllide a biosynthesis I (aerobic, light-dependent):
 +
** '''6''' reactions found over '''9''' reactions in the full pathway
 +
* [[HEME-BIOSYNTHESIS-II]], heme b biosynthesis I (aerobic):
 +
** '''4''' reactions found over '''4''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[manual]]; source: [[reaction_creator_sjap]]; tool: [[curation]]; comment: curation sterols (girard et al.)
+
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=25577 25577]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R03222 R03222]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/P50336 P50336]
 +
** [http://www.uniprot.org/uniprot/Q49404 Q49404]
 +
** [http://www.uniprot.org/uniprot/Q9CHX0 Q9CHX0]
 +
** [http://www.uniprot.org/uniprot/P0ACB4 P0ACB4]
 +
** [http://www.uniprot.org/uniprot/Q7M1R6 Q7M1R6]
 +
** [http://www.uniprot.org/uniprot/P51175 P51175]
 +
** [http://www.uniprot.org/uniprot/O24163 O24163]
 +
** [http://www.uniprot.org/uniprot/O24164 O24164]
 +
** [http://www.uniprot.org/uniprot/O64384 O64384]
 +
** [http://www.uniprot.org/uniprot/O64385 O64385]
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: nb gene associated=0}}
+
{{#set: common-name=protoporphyrinogen oxidase}}
−
{{#set: nb pathway associated=1}}
+
{{#set: ec-number=ec-1.3.3.4}}
−
{{#set: reconstruction category=manual}}
+
{{#set: nb gene associated=1}}
−
{{#set: reconstruction tool=curation}}
+
{{#set: nb pathway associated=4}}
−
{{#set: reconstruction comment=curation sterols (girard et al.)}}
+
{{#set: reconstruction category=annotation|orthology}}
−
{{#set: reconstruction source=reaction_creator_sjap}}
+
{{#set: reconstruction tool=pathwaytools|pantograph}}
 +
{{#set: reconstruction comment=n.a}}
 +
{{#set: reconstruction source=output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}

Revision as of 19:07, 14 January 2021

Reaction PROTOPORGENOXI-RXN

  • direction:
    • left-to-right
  • common-name:
    • protoporphyrinogen oxidase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-7159, 3,8-divinyl-chlorophyllide a biosynthesis III (aerobic, light independent):
    • 5 reactions found over 9 reactions in the full pathway
  • PWY0-1415, superpathway of heme b biosynthesis from uroporphyrinogen-III:
    • 5 reactions found over 4 reactions in the full pathway
  • CHLOROPHYLL-SYN, 3,8-divinyl-chlorophyllide a biosynthesis I (aerobic, light-dependent):
    • 6 reactions found over 9 reactions in the full pathway
  • HEME-BIOSYNTHESIS-II, heme b biosynthesis I (aerobic):
    • 4 reactions found over 4 reactions in the full pathway

Reconstruction information

External links





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