Difference between revisions of "RXN-13202"

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(Created page with "Category:reaction == Reaction DTDPGLUCDEHYDRAT-RXN == * direction: ** left-to-right * common-name: ** dtdp-glucose 4,6-dehydratase * ec-number: ** [http://enzyme.expasy.or...")
(Created page with "Category:reaction == Reaction L-LACTATE-DEHYDROGENASE-RXN == * direction: ** reversible * ec-number: ** [http://enzyme.expasy.org/EC/1.1.1.27 ec-1.1.1.27] == Reaction form...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction DTDPGLUCDEHYDRAT-RXN ==
+
== Reaction L-LACTATE-DEHYDROGENASE-RXN ==
 
* direction:
 
* direction:
−
** left-to-right
+
** reversible
−
* common-name:
 
−
** dtdp-glucose 4,6-dehydratase
 
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/4.2.1.46 ec-4.2.1.46]
+
** [http://enzyme.expasy.org/EC/1.1.1.27 ec-1.1.1.27]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[DTDP-D-GLUCOSE]][c] '''=>''' 1 [[DTDP-DEOH-DEOXY-GLUCOSE]][c] '''+''' 1 [[WATER]][c]
+
* 1 [[L-LACTATE]][c] '''+''' 1 [[NAD]][c] '''<=>''' 1 [[NADH]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[PYRUVATE]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ10476]]
+
* Gene: [[SJ03192]]
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ16241]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ00231]]
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* [[P122-PWY]], heterolactic fermentation:
−
* [[PWY-6808]], dTDP-D-forosamine biosynthesis:
+
** '''16''' reactions found over '''18''' reactions in the full pathway
−
** '''1''' reactions found over '''9''' reactions in the full pathway
+
* [[P124-PWY]], Bifidobacterium shunt:
−
* [[PWY-7657]], dTDP-&beta;-L-digitoxose biosynthesis:
+
** '''12''' reactions found over '''15''' reactions in the full pathway
−
** '''1''' reactions found over '''7''' reactions in the full pathway
+
* [[PWY-5481]], pyruvate fermentation to (S)-lactate:
−
* [[PWY-7104]], dTDP-L-megosamine biosynthesis:
+
** '''1''' reactions found over '''1''' reactions in the full pathway
−
** '''1''' reactions found over '''8''' reactions in the full pathway
+
* [[PWY-6901]], superpathway of glucose and xylose degradation:
−
* [[PWY-6973]], dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis:
+
** '''10''' reactions found over '''8''' reactions in the full pathway
−
** '''1''' reactions found over '''9''' reactions in the full pathway
 
−
* [[PWY-6974]], dTDP-L-olivose biosynthesis:
 
−
** '''1''' reactions found over '''7''' reactions in the full pathway
 
−
* [[PWY-6976]], dTDP-L-mycarose biosynthesis:
 
−
** '''1''' reactions found over '''7''' reactions in the full pathway
 
−
* [[PWY-6953]], dTDP-3-acetamido-&alpha;-D-fucose biosynthesis:
 
−
** '''1''' reactions found over '''5''' reactions in the full pathway
 
−
* [[PWY-7414]], dTDP-&alpha;-D-mycaminose biosynthesis:
 
−
** '''1''' reactions found over '''5''' reactions in the full pathway
 
−
* [[PWY-7315]], dTDP-N-acetylthomosamine biosynthesis:
 
−
** '''1''' reactions found over '''4''' reactions in the full pathway
 
−
* [[PWY-7318]], dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-glucose biosynthesis:
 
−
** '''1''' reactions found over '''5''' reactions in the full pathway
 
−
* [[PWY-6942]], dTDP-D-desosamine biosynthesis:
 
−
** '''1''' reactions found over '''6''' reactions in the full pathway
 
−
* [[PWY-7440]], dTDP-&beta;-L-4-epi-vancosamine biosynthesis:
 
−
** '''1''' reactions found over '''8''' reactions in the full pathway
 
−
* [[PWY-7814]], dTDP-L-daunosamine biosynthesis:
 
−
** '''2''' reactions found over '''6''' reactions in the full pathway
 
−
* [[PWY-3221]]:
 
−
** '''1''' reactions found over '''n.a''' reactions in the full pathway
 
−
* [[PWY-7413]], dTDP-6-deoxy-&alpha;-D-allose biosynthesis:
 
−
** '''1''' reactions found over '''4''' reactions in the full pathway
 
−
* [[PWY-7312]], dTDP-D-&beta;-fucofuranose biosynthesis:
 
−
** '''1''' reactions found over '''4''' reactions in the full pathway
 
−
* [[PWY-7316]], dTDP-N-acetylviosamine biosynthesis:
 
−
** '''1''' reactions found over '''4''' reactions in the full pathway
 
−
* [[DTDPRHAMSYN-PWY]], dTDP-L-rhamnose biosynthesis:
 
−
** '''3''' reactions found over '''4''' reactions in the full pathway
 
−
* [[PWY-7688]], dTDP-D-ravidosamine and dTDP-4-acetyl-D-ravidosamine biosynthesis:
 
−
** '''1''' reactions found over '''6''' reactions in the full pathway
 
−
* [[PWY-7301]], dTDP-4-O-demethyl-&beta;-L-noviose biosynthesis:
 
−
** '''2''' reactions found over '''5''' reactions in the full pathway
 
−
</div>
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
−
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
−
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17221 17221]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=23447 23447]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R06513 R06513]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00703 R00703]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/Q9R5L1 Q9R5L1]
+
** [http://www.uniprot.org/uniprot/P04034 P04034]
−
** [http://www.uniprot.org/uniprot/P44914 P44914]
+
** [http://www.uniprot.org/uniprot/P04642 P04642]
−
** [http://www.uniprot.org/uniprot/P29782 P29782]
+
** [http://www.uniprot.org/uniprot/P06150 P06150]
−
** [http://www.uniprot.org/uniprot/P27830 P27830]
+
** [http://www.uniprot.org/uniprot/P20373 P20373]
−
** [http://www.uniprot.org/uniprot/P55294 P55294]
+
** [http://www.uniprot.org/uniprot/P13491 P13491]
−
** [http://www.uniprot.org/uniprot/Q9S642 Q9S642]
+
** [http://www.uniprot.org/uniprot/P22988 P22988]
−
** [http://www.uniprot.org/uniprot/P37759 P37759]
+
** [http://www.uniprot.org/uniprot/P56512 P56512]
−
** [http://www.uniprot.org/uniprot/P26391 P26391]
+
** [http://www.uniprot.org/uniprot/Q7M1E1 Q7M1E1]
−
** [http://www.uniprot.org/uniprot/Q59626 Q59626]
+
** [http://www.uniprot.org/uniprot/P33571 P33571]
−
** [http://www.uniprot.org/uniprot/P39630 P39630]
+
** [http://www.uniprot.org/uniprot/P13743 P13743]
−
** [http://www.uniprot.org/uniprot/P37777 P37777]
+
** [http://www.uniprot.org/uniprot/P26283 P26283]
−
** [http://www.uniprot.org/uniprot/P37761 P37761]
+
** [http://www.uniprot.org/uniprot/Q01462 Q01462]
−
** [http://www.uniprot.org/uniprot/Q54144 Q54144]
+
** [http://www.uniprot.org/uniprot/Q06176 Q06176]
−
** [http://www.uniprot.org/uniprot/Q56173 Q56173]
+
** [http://www.uniprot.org/uniprot/Q9PNC8 Q9PNC8]
−
** [http://www.uniprot.org/uniprot/Q55420 Q55420]
+
** [http://www.uniprot.org/uniprot/Q59244 Q59244]
−
** [http://www.uniprot.org/uniprot/P55293 P55293]
+
** [http://www.uniprot.org/uniprot/P13490 P13490]
−
** [http://www.uniprot.org/uniprot/O66249 O66249]
+
** [http://www.uniprot.org/uniprot/P22989 P22989]
−
** [http://www.uniprot.org/uniprot/Q9RMC4 Q9RMC4]
+
** [http://www.uniprot.org/uniprot/P56511 P56511]
−
** [http://www.uniprot.org/uniprot/O08246 O08246]
+
** [http://www.uniprot.org/uniprot/Q60176 Q60176]
−
** [http://www.uniprot.org/uniprot/Q9RR28 Q9RR28]
+
** [http://www.uniprot.org/uniprot/P33232 P33232]
−
** [http://www.uniprot.org/uniprot/Q9SMJ5 Q9SMJ5]
+
** [http://www.uniprot.org/uniprot/P00344 P00344]
 +
** [http://www.uniprot.org/uniprot/P00345 P00345]
 +
** [http://www.uniprot.org/uniprot/P00337 P00337]
 +
** [http://www.uniprot.org/uniprot/P00340 P00340]
 +
** [http://www.uniprot.org/uniprot/P00341 P00341]
 +
** [http://www.uniprot.org/uniprot/P07864 P07864]
 +
** [http://www.uniprot.org/uniprot/P07195 P07195]
 +
** [http://www.uniprot.org/uniprot/P00338 P00338]
 +
** [http://www.uniprot.org/uniprot/P00343 P00343]
 +
** [http://www.uniprot.org/uniprot/P00342 P00342]
 +
** [http://www.uniprot.org/uniprot/P06151 P06151]
 +
** [http://www.uniprot.org/uniprot/P00336 P00336]
 +
** [http://www.uniprot.org/uniprot/P00339 P00339]
 +
** [http://www.uniprot.org/uniprot/P13714 P13714]
 +
** [http://www.uniprot.org/uniprot/P50933 P50933]
 +
** [http://www.uniprot.org/uniprot/O23569 O23569]
 +
** [http://www.uniprot.org/uniprot/P47698 P47698]
 +
** [http://www.uniprot.org/uniprot/Q9CII4 Q9CII4]
 +
** [http://www.uniprot.org/uniprot/Q9CGG8 Q9CGG8]
 +
** [http://www.uniprot.org/uniprot/Q07251 Q07251]
 +
** [http://www.uniprot.org/uniprot/Q62545 Q62545]
 +
** [http://www.uniprot.org/uniprot/P42121 P42121]
 +
** [http://www.uniprot.org/uniprot/P42119 P42119]
 +
** [http://www.uniprot.org/uniprot/P42120 P42120]
 +
** [http://www.uniprot.org/uniprot/P42123 P42123]
 +
** [http://www.uniprot.org/uniprot/P19629 P19629]
 +
** [http://www.uniprot.org/uniprot/Q60009 Q60009]
 +
** [http://www.uniprot.org/uniprot/Q27888 Q27888]
 +
** [http://www.uniprot.org/uniprot/P19869 P19869]
 +
** [http://www.uniprot.org/uniprot/P19858 P19858]
 +
** [http://www.uniprot.org/uniprot/P13715 P13715]
 +
** [http://www.uniprot.org/uniprot/P10655 P10655]
 +
** [http://www.uniprot.org/uniprot/P14561 P14561]
 +
** [http://www.uniprot.org/uniprot/P20619 P20619]
 +
** [http://www.uniprot.org/uniprot/P16125 P16125]
 +
** [http://www.uniprot.org/uniprot/P29038 P29038]
 +
** [http://www.uniprot.org/uniprot/P0C0J3 P0C0J3]
 +
** [http://www.uniprot.org/uniprot/P16115 P16115]
 +
** [http://www.uniprot.org/uniprot/Q48662 Q48662]
 +
** [http://www.uniprot.org/uniprot/Q9ZRJ5 Q9ZRJ5]
 +
** [http://www.uniprot.org/uniprot/O81272 O81272]
 +
** [http://www.uniprot.org/uniprot/Q9SBE4 Q9SBE4]
 +
** [http://www.uniprot.org/uniprot/Q96569 Q96569]
 +
** [http://www.uniprot.org/uniprot/Q96570 Q96570]
 +
** [http://www.uniprot.org/uniprot/P46454 P46454]
 
</div>
 
</div>
−
{{#set: direction=left-to-right}}
+
{{#set: direction=reversible}}
−
{{#set: common-name=dtdp-glucose 4,6-dehydratase}}
+
{{#set: ec-number=ec-1.1.1.27}}
−
{{#set: ec-number=ec-4.2.1.46}}
+
{{#set: nb gene associated=1}}
−
{{#set: nb gene associated=3}}
+
{{#set: nb pathway associated=4}}
−
{{#set: nb pathway associated=20}}
+
{{#set: reconstruction category=orthology}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction tool=pantograph}}
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus}}

Revision as of 19:06, 14 January 2021

Reaction L-LACTATE-DEHYDROGENASE-RXN

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • P122-PWY, heterolactic fermentation:
    • 16 reactions found over 18 reactions in the full pathway
  • P124-PWY, Bifidobacterium shunt:
    • 12 reactions found over 15 reactions in the full pathway
  • PWY-5481, pyruvate fermentation to (S)-lactate:
    • 1 reactions found over 1 reactions in the full pathway
  • PWY-6901, superpathway of glucose and xylose degradation:
    • 10 reactions found over 8 reactions in the full pathway

Reconstruction information

External links





Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=RXN-13202&oldid=103713"