Difference between revisions of "RXN-13202"

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(Created page with "Category:reaction == Reaction DTDPGLUCDEHYDRAT-RXN == * direction: ** left-to-right * common-name: ** dtdp-glucose 4,6-dehydratase * ec-number: ** [http://enzyme.expasy.or...")
(Created page with "Category:reaction == Reaction RXN-13202 == * direction: ** left-to-right * common-name: ** ammonia-dependent carbamoyl-phosphate synthase * ec-number: ** [http://enzyme.ex...")
 
(3 intermediate revisions by 2 users not shown)
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction DTDPGLUCDEHYDRAT-RXN ==
+
== Reaction RXN-13202 ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** dtdp-glucose 4,6-dehydratase
+
** ammonia-dependent carbamoyl-phosphate synthase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/4.2.1.46 ec-4.2.1.46]
+
** [http://enzyme.expasy.org/EC/6.3.4.16 ec-6.3.4.16]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[DTDP-D-GLUCOSE]][c] '''=>''' 1 [[DTDP-DEOH-DEOXY-GLUCOSE]][c] '''+''' 1 [[WATER]][c]
+
* 1 [[AMMONIUM]][c] '''+''' 2 [[ATP]][c] '''+''' 1 [[HCO3]][c] '''=>''' 2 [[ADP]][c] '''+''' 1 [[CARBAMOYL-P]][c] '''+''' 2 [[PROTON]][c] '''+''' 1 [[Pi]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ10476]]
+
* Gene: [[SJ17851]]
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ16241]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ00231]]
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ15949]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* [[PWY-4984]], urea cycle:
−
* [[PWY-6808]], dTDP-D-forosamine biosynthesis:
+
** '''5''' reactions found over '''5''' reactions in the full pathway
−
** '''1''' reactions found over '''9''' reactions in the full pathway
 
−
* [[PWY-7657]], dTDP-&beta;-L-digitoxose biosynthesis:
 
−
** '''1''' reactions found over '''7''' reactions in the full pathway
 
−
* [[PWY-7104]], dTDP-L-megosamine biosynthesis:
 
−
** '''1''' reactions found over '''8''' reactions in the full pathway
 
−
* [[PWY-6973]], dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis:
 
−
** '''1''' reactions found over '''9''' reactions in the full pathway
 
−
* [[PWY-6974]], dTDP-L-olivose biosynthesis:
 
−
** '''1''' reactions found over '''7''' reactions in the full pathway
 
−
* [[PWY-6976]], dTDP-L-mycarose biosynthesis:
 
−
** '''1''' reactions found over '''7''' reactions in the full pathway
 
−
* [[PWY-6953]], dTDP-3-acetamido-&alpha;-D-fucose biosynthesis:
 
−
** '''1''' reactions found over '''5''' reactions in the full pathway
 
−
* [[PWY-7414]], dTDP-&alpha;-D-mycaminose biosynthesis:
 
−
** '''1''' reactions found over '''5''' reactions in the full pathway
 
−
* [[PWY-7315]], dTDP-N-acetylthomosamine biosynthesis:
 
−
** '''1''' reactions found over '''4''' reactions in the full pathway
 
−
* [[PWY-7318]], dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-glucose biosynthesis:
 
−
** '''1''' reactions found over '''5''' reactions in the full pathway
 
−
* [[PWY-6942]], dTDP-D-desosamine biosynthesis:
 
−
** '''1''' reactions found over '''6''' reactions in the full pathway
 
−
* [[PWY-7440]], dTDP-&beta;-L-4-epi-vancosamine biosynthesis:
 
−
** '''1''' reactions found over '''8''' reactions in the full pathway
 
−
* [[PWY-7814]], dTDP-L-daunosamine biosynthesis:
 
−
** '''2''' reactions found over '''6''' reactions in the full pathway
 
−
* [[PWY-3221]]:
 
−
** '''1''' reactions found over '''n.a''' reactions in the full pathway
 
−
* [[PWY-7413]], dTDP-6-deoxy-&alpha;-D-allose biosynthesis:
 
−
** '''1''' reactions found over '''4''' reactions in the full pathway
 
−
* [[PWY-7312]], dTDP-D-&beta;-fucofuranose biosynthesis:
 
−
** '''1''' reactions found over '''4''' reactions in the full pathway
 
−
* [[PWY-7316]], dTDP-N-acetylviosamine biosynthesis:
 
−
** '''1''' reactions found over '''4''' reactions in the full pathway
 
−
* [[DTDPRHAMSYN-PWY]], dTDP-L-rhamnose biosynthesis:
 
−
** '''3''' reactions found over '''4''' reactions in the full pathway
 
−
* [[PWY-7688]], dTDP-D-ravidosamine and dTDP-4-acetyl-D-ravidosamine biosynthesis:
 
−
** '''1''' reactions found over '''6''' reactions in the full pathway
 
−
* [[PWY-7301]], dTDP-4-O-demethyl-&beta;-L-noviose biosynthesis:
 
−
** '''2''' reactions found over '''5''' reactions in the full pathway
 
−
</div>
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
+
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* METANETX-RXN : MNXR96486
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/O15829 O15829]
 +
** [http://www.uniprot.org/uniprot/O15830 O15830]
 +
** [http://www.uniprot.org/uniprot/P07756 P07756]
 +
** [http://www.uniprot.org/uniprot/P31327 P31327]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R00149 R00149]
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17221 17221]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=18030 18030]
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R06513 R06513]
 
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/Q9R5L1 Q9R5L1]
 
−
** [http://www.uniprot.org/uniprot/P44914 P44914]
 
−
** [http://www.uniprot.org/uniprot/P29782 P29782]
 
−
** [http://www.uniprot.org/uniprot/P27830 P27830]
 
−
** [http://www.uniprot.org/uniprot/P55294 P55294]
 
−
** [http://www.uniprot.org/uniprot/Q9S642 Q9S642]
 
−
** [http://www.uniprot.org/uniprot/P37759 P37759]
 
−
** [http://www.uniprot.org/uniprot/P26391 P26391]
 
−
** [http://www.uniprot.org/uniprot/Q59626 Q59626]
 
−
** [http://www.uniprot.org/uniprot/P39630 P39630]
 
−
** [http://www.uniprot.org/uniprot/P37777 P37777]
 
−
** [http://www.uniprot.org/uniprot/P37761 P37761]
 
−
** [http://www.uniprot.org/uniprot/Q54144 Q54144]
 
−
** [http://www.uniprot.org/uniprot/Q56173 Q56173]
 
−
** [http://www.uniprot.org/uniprot/Q55420 Q55420]
 
−
** [http://www.uniprot.org/uniprot/P55293 P55293]
 
−
** [http://www.uniprot.org/uniprot/O66249 O66249]
 
−
** [http://www.uniprot.org/uniprot/Q9RMC4 Q9RMC4]
 
−
** [http://www.uniprot.org/uniprot/O08246 O08246]
 
−
** [http://www.uniprot.org/uniprot/Q9RR28 Q9RR28]
 
−
** [http://www.uniprot.org/uniprot/Q9SMJ5 Q9SMJ5]
 
−
</div>
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=dtdp-glucose 4,6-dehydratase}}
+
{{#set: common-name=ammonia-dependent carbamoyl-phosphate synthase}}
−
{{#set: ec-number=ec-4.2.1.46}}
+
{{#set: ec-number=ec-6.3.4.16}}
−
{{#set: nb gene associated=3}}
+
{{#set: nb gene associated=2}}
−
{{#set: nb pathway associated=20}}
+
{{#set: nb pathway associated=1}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction category=orthology|annotation}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}

Latest revision as of 11:24, 18 March 2021

Reaction RXN-13202

  • direction:
    • left-to-right
  • common-name:
    • ammonia-dependent carbamoyl-phosphate synthase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-4984, urea cycle:
    • 5 reactions found over 5 reactions in the full pathway

Reconstruction information

External links





Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=RXN-13202&oldid=142785"