Difference between revisions of "RXN-13202"

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(Created page with "Category:reaction == Reaction FPGFTh == * direction: ** reversible * common-name: ** 10-formyltetrahydrofolate:5'-phosphoribosylglycinamide formyltransferase, chloroplast...")
(Created page with "Category:reaction == Reaction DTDPGLUCDEHYDRAT-RXN == * direction: ** left-to-right * common-name: ** dtdp-glucose 4,6-dehydratase * ec-number: ** [http://enzyme.expasy.or...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction FPGFTh ==
+
== Reaction DTDPGLUCDEHYDRAT-RXN ==
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
 
* common-name:
 
* common-name:
−
** 10-formyltetrahydrofolate:5'-phosphoribosylglycinamide formyltransferase, chloroplast
+
** dtdp-glucose 4,6-dehydratase
 +
* ec-number:
 +
** [http://enzyme.expasy.org/EC/4.2.1.46 ec-4.2.1.46]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1.0 [[10-FORMYL-THF]][h] '''+''' 1.0 [[5-PHOSPHO-RIBOSYL-GLYCINEAMIDE]][h] '''<=>''' 1.0 [[5-P-RIBOSYL-N-FORMYLGLYCINEAMIDE]][h] '''+''' 1.0 [[PROTON]][h] '''+''' 1.0 [[THF]][h]
+
* 1 [[DTDP-D-GLUCOSE]][c] '''=>''' 1 [[DTDP-DEOH-DEOXY-GLUCOSE]][c] '''+''' 1 [[WATER]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ06408]]
+
* Gene: [[SJ10476]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ16241]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ00231]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 +
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* [[PWY-6808]], dTDP-D-forosamine biosynthesis:
 +
** '''1''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-7657]], dTDP-&beta;-L-digitoxose biosynthesis:
 +
** '''1''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY-7104]], dTDP-L-megosamine biosynthesis:
 +
** '''1''' reactions found over '''8''' reactions in the full pathway
 +
* [[PWY-6973]], dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis:
 +
** '''1''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-6974]], dTDP-L-olivose biosynthesis:
 +
** '''1''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY-6976]], dTDP-L-mycarose biosynthesis:
 +
** '''1''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY-6953]], dTDP-3-acetamido-&alpha;-D-fucose biosynthesis:
 +
** '''1''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-7414]], dTDP-&alpha;-D-mycaminose biosynthesis:
 +
** '''1''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-7315]], dTDP-N-acetylthomosamine biosynthesis:
 +
** '''1''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-7318]], dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-glucose biosynthesis:
 +
** '''1''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-6942]], dTDP-D-desosamine biosynthesis:
 +
** '''1''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY-7440]], dTDP-&beta;-L-4-epi-vancosamine biosynthesis:
 +
** '''1''' reactions found over '''8''' reactions in the full pathway
 +
* [[PWY-7814]], dTDP-L-daunosamine biosynthesis:
 +
** '''2''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY-3221]]:
 +
** '''1''' reactions found over '''n.a''' reactions in the full pathway
 +
* [[PWY-7413]], dTDP-6-deoxy-&alpha;-D-allose biosynthesis:
 +
** '''1''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-7312]], dTDP-D-&beta;-fucofuranose biosynthesis:
 +
** '''1''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-7316]], dTDP-N-acetylviosamine biosynthesis:
 +
** '''1''' reactions found over '''4''' reactions in the full pathway
 +
* [[DTDPRHAMSYN-PWY]], dTDP-L-rhamnose biosynthesis:
 +
** '''3''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-7688]], dTDP-D-ravidosamine and dTDP-4-acetyl-D-ravidosamine biosynthesis:
 +
** '''1''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY-7301]], dTDP-4-O-demethyl-&beta;-L-noviose biosynthesis:
 +
** '''2''' reactions found over '''5''' reactions in the full pathway
 +
</div>
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
{{#set: direction=reversible}}
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
{{#set: common-name=10-formyltetrahydrofolate:5'-phosphoribosylglycinamide formyltransferase, chloroplast}}
+
* RHEA:
−
{{#set: nb gene associated=1}}
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17221 17221]
−
{{#set: nb pathway associated=0}}
+
* LIGAND-RXN:
−
{{#set: reconstruction category=orthology}}
+
** [http://www.genome.jp/dbget-bin/www_bget?R06513 R06513]
−
{{#set: reconstruction tool=pantograph}}
+
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/Q9R5L1 Q9R5L1]
 +
** [http://www.uniprot.org/uniprot/P44914 P44914]
 +
** [http://www.uniprot.org/uniprot/P29782 P29782]
 +
** [http://www.uniprot.org/uniprot/P27830 P27830]
 +
** [http://www.uniprot.org/uniprot/P55294 P55294]
 +
** [http://www.uniprot.org/uniprot/Q9S642 Q9S642]
 +
** [http://www.uniprot.org/uniprot/P37759 P37759]
 +
** [http://www.uniprot.org/uniprot/P26391 P26391]
 +
** [http://www.uniprot.org/uniprot/Q59626 Q59626]
 +
** [http://www.uniprot.org/uniprot/P39630 P39630]
 +
** [http://www.uniprot.org/uniprot/P37777 P37777]
 +
** [http://www.uniprot.org/uniprot/P37761 P37761]
 +
** [http://www.uniprot.org/uniprot/Q54144 Q54144]
 +
** [http://www.uniprot.org/uniprot/Q56173 Q56173]
 +
** [http://www.uniprot.org/uniprot/Q55420 Q55420]
 +
** [http://www.uniprot.org/uniprot/P55293 P55293]
 +
** [http://www.uniprot.org/uniprot/O66249 O66249]
 +
** [http://www.uniprot.org/uniprot/Q9RMC4 Q9RMC4]
 +
** [http://www.uniprot.org/uniprot/O08246 O08246]
 +
** [http://www.uniprot.org/uniprot/Q9RR28 Q9RR28]
 +
** [http://www.uniprot.org/uniprot/Q9SMJ5 Q9SMJ5]
 +
</div>
 +
{{#set: direction=left-to-right}}
 +
{{#set: common-name=dtdp-glucose 4,6-dehydratase}}
 +
{{#set: ec-number=ec-4.2.1.46}}
 +
{{#set: nb gene associated=3}}
 +
{{#set: nb pathway associated=20}}
 +
{{#set: reconstruction category=annotation|orthology}}
 +
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina}}
+
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}

Revision as of 13:20, 14 January 2021

Reaction DTDPGLUCDEHYDRAT-RXN

  • direction:
    • left-to-right
  • common-name:
    • dtdp-glucose 4,6-dehydratase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-6808, dTDP-D-forosamine biosynthesis:
    • 1 reactions found over 9 reactions in the full pathway
  • PWY-7657, dTDP-β-L-digitoxose biosynthesis:
    • 1 reactions found over 7 reactions in the full pathway
  • PWY-7104, dTDP-L-megosamine biosynthesis:
    • 1 reactions found over 8 reactions in the full pathway
  • PWY-6973, dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis:
    • 1 reactions found over 9 reactions in the full pathway
  • PWY-6974, dTDP-L-olivose biosynthesis:
    • 1 reactions found over 7 reactions in the full pathway
  • PWY-6976, dTDP-L-mycarose biosynthesis:
    • 1 reactions found over 7 reactions in the full pathway
  • PWY-6953, dTDP-3-acetamido-α-D-fucose biosynthesis:
    • 1 reactions found over 5 reactions in the full pathway
  • PWY-7414, dTDP-α-D-mycaminose biosynthesis:
    • 1 reactions found over 5 reactions in the full pathway
  • PWY-7315, dTDP-N-acetylthomosamine biosynthesis:
    • 1 reactions found over 4 reactions in the full pathway
  • PWY-7318, dTDP-3-acetamido-3,6-dideoxy-α-D-glucose biosynthesis:
    • 1 reactions found over 5 reactions in the full pathway
  • PWY-6942, dTDP-D-desosamine biosynthesis:
    • 1 reactions found over 6 reactions in the full pathway
  • PWY-7440, dTDP-β-L-4-epi-vancosamine biosynthesis:
    • 1 reactions found over 8 reactions in the full pathway
  • PWY-7814, dTDP-L-daunosamine biosynthesis:
    • 2 reactions found over 6 reactions in the full pathway
  • PWY-3221:
    • 1 reactions found over n.a reactions in the full pathway
  • PWY-7413, dTDP-6-deoxy-α-D-allose biosynthesis:
    • 1 reactions found over 4 reactions in the full pathway
  • PWY-7312, dTDP-D-β-fucofuranose biosynthesis:
    • 1 reactions found over 4 reactions in the full pathway
  • PWY-7316, dTDP-N-acetylviosamine biosynthesis:
    • 1 reactions found over 4 reactions in the full pathway
  • DTDPRHAMSYN-PWY, dTDP-L-rhamnose biosynthesis:
    • 3 reactions found over 4 reactions in the full pathway
  • PWY-7688, dTDP-D-ravidosamine and dTDP-4-acetyl-D-ravidosamine biosynthesis:
    • 1 reactions found over 6 reactions in the full pathway
  • PWY-7301, dTDP-4-O-demethyl-β-L-noviose biosynthesis:
    • 2 reactions found over 5 reactions in the full pathway

Reconstruction information

External links





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