Difference between revisions of "RXN-1321"

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(Created page with "Category:pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6748 PWY-6748] == * taxonomic-range: ** [http://metacyc.org/META/NEW-IMAGE?object=tax-2 tax-2] *...")
(Created page with "Category:reaction == Reaction RXN-1321 == * direction: ** left-to-right * common-name: ** linoleate 13s-lipoxygenase * ec-number: ** [http://enzyme.expasy.org/EC/1.13.11.1...")
 
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[[Category:pathway]]
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[[Category:reaction]]
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6748 PWY-6748] ==
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== Reaction RXN-1321 ==
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* taxonomic-range:
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* direction:
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** [http://metacyc.org/META/NEW-IMAGE?object=tax-2 tax-2]
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** left-to-right
 
* common-name:
 
* common-name:
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** nitrate reduction vii (denitrification)
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** linoleate 13s-lipoxygenase
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== Reaction(s) found ==
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* ec-number:
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* [[NITRITE-REDUCTASE-CYTOCHROME-RXN]]
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** [http://enzyme.expasy.org/EC/1.13.11.12 ec-1.13.11.12]
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== Reaction(s) not found ==
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== Reaction formula ==
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-11236 RXN-11236]
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* 1 [[LINOLENIC_ACID]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c] '''=>''' 1 [[CPD-725]][c]
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* [http://metacyc.org/META/NEW-IMAGE?object=TRANS-RXN0-239 TRANS-RXN0-239]
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== Gene(s) associated with this reaction  ==
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-12129 RXN-12129]
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<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-12130 RXN-12130]
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* Gene: [[SJ03316]]
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{{#set: taxonomic-range=tax-2}}
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** Category: [[annotation]]
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{{#set: common-name=nitrate reduction vii (denitrification)}}
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
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{{#set: nb reaction found=1}}
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** Category: [[orthology]]
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{{#set: completion rate=0.2}}
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*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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{{#set: nb total reaction=5}}
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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* Gene: [[SJ12567]]
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** Category: [[annotation]]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
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** Category: [[orthology]]
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*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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* Gene: [[SJ21863]]
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** Category: [[orthology]]
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*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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* Gene: [[SJ05859]]
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** Category: [[orthology]]
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*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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* Gene: [[SJ08291]]
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** Category: [[annotation]]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
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** Category: [[orthology]]
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*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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* Gene: [[SJ08276]]
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** Category: [[orthology]]
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*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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* Gene: [[SJ21862]]
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** Category: [[orthology]]
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*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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* Gene: [[SJ05858]]
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** Category: [[orthology]]
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*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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* Gene: [[SJ21859]]
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** Category: [[orthology]]
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*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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* Gene: [[SJ16634]]
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** Category: [[orthology]]
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*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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* Gene: [[SJ16632]]
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** Category: [[annotation]]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
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** Category: [[orthology]]
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*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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* Gene: [[SJ16633]]
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** Category: [[annotation]]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
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** Category: [[orthology]]
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*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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</div>
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== Pathway(s)  ==
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* [[PWY-5410]], traumatin and (Z)-3-hexen-1-yl acetate biosynthesis:
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** '''2''' reactions found over '''9''' reactions in the full pathway
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* [[PWY-735]], jasmonic acid biosynthesis:
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** '''16''' reactions found over '''19''' reactions in the full pathway
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== Reconstruction information  ==
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* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
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== External links  ==
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* METANETX-RXN : MNXR111452
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* RHEA:
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=34496 34496]
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* LIGAND-RXN:
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** [http://www.genome.jp/dbget-bin/www_bget?R07869 R07869]
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{{#set: direction=left-to-right}}
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{{#set: common-name=linoleate 13s-lipoxygenase}}
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{{#set: ec-number=ec-1.13.11.12}}
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{{#set: nb gene associated=12}}
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{{#set: nb pathway associated=2}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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{{#set: reconstruction comment=n.a}}
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{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome}}

Latest revision as of 11:23, 18 March 2021

Reaction RXN-1321

  • direction:
    • left-to-right
  • common-name:
    • linoleate 13s-lipoxygenase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-5410, traumatin and (Z)-3-hexen-1-yl acetate biosynthesis:
    • 2 reactions found over 9 reactions in the full pathway
  • PWY-735, jasmonic acid biosynthesis:
    • 16 reactions found over 19 reactions in the full pathway

Reconstruction information

External links

  • METANETX-RXN : MNXR111452
  • RHEA:
  • LIGAND-RXN:





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