Difference between revisions of "RXN-13225"

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(Created page with "Category:reaction == Reaction 2.4.1.68-RXN == * direction: ** left-to-right * common-name: ** glycoprotein 6-alpha-l-fucosyltransferase * ec-number: ** [http://enzyme.expa...")
(Created page with "Category:reaction == Reaction RXN-9556 == * direction: ** left-to-right * common-name: ** 3-oxo-cis-vaccenoyl-[acyl-carrier protein] reductase ** 3-oxo-cis-vaccenoyl-[acp]...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction 2.4.1.68-RXN ==
+
== Reaction RXN-9556 ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** glycoprotein 6-alpha-l-fucosyltransferase
+
** 3-oxo-cis-vaccenoyl-[acyl-carrier protein] reductase
 +
** 3-oxo-cis-vaccenoyl-[acp] reductase
 +
** 3-oxoacyl-[acyl-carrier-protein] reductase (nadph)
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.4.1.68 ec-2.4.1.68]
+
** [http://enzyme.expasy.org/EC/1.1.1.100 ec-1.1.1.100]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[2-2-N-linked-Glycan]][c] '''+''' 1 [[CPD-13118]][c] '''=>''' 1 [[GDP]][c] '''+''' 1 [[N4-N-ACETYL-BETA-D-GLUCOSAMINYL-F6]][c] '''+''' 1 [[PROTON]][c]
+
* 1 [[3-oxo-cis-vaccenoyl-ACPs]][c] '''+''' 1 [[NADPH]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[NADP]][c] '''+''' 1 [[R-3-hydroxy-cis-vaccenoyl-ACPs]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ02940]]
+
* Gene: [[SJ17743]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
* Gene: [[SJ22297]]
+
* Gene: [[SJ04229]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ07771]]
+
* Gene: [[SJ13014]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-7426]], complex N-linked glycan biosynthesis (vertebrates):
+
* [[PWY-5973]], cis-vaccenate biosynthesis:
−
** '''4''' reactions found over '''10''' reactions in the full pathway
+
** '''4''' reactions found over '''5''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R05988 R05988]
 
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12985 12985]
 
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/Q9BYC5 Q9BYC5]
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=glycoprotein 6-alpha-l-fucosyltransferase}}
+
{{#set: common-name=3-oxoacyl-[acyl-carrier-protein] reductase (nadph)|3-oxo-cis-vaccenoyl-[acyl-carrier protein] reductase|3-oxo-cis-vaccenoyl-[acp] reductase}}
−
{{#set: ec-number=ec-2.4.1.68}}
+
{{#set: ec-number=ec-1.1.1.100}}
 
{{#set: nb gene associated=3}}
 
{{#set: nb gene associated=3}}
 
{{#set: nb pathway associated=1}}
 
{{#set: nb pathway associated=1}}
−
{{#set: reconstruction category=annotation}}
+
{{#set: reconstruction category=annotation|orthology}}
−
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome}}
+
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}

Revision as of 13:19, 14 January 2021

Reaction RXN-9556

  • direction:
    • left-to-right
  • common-name:
    • 3-oxo-cis-vaccenoyl-[acyl-carrier protein] reductase
    • 3-oxo-cis-vaccenoyl-[acp] reductase
    • 3-oxoacyl-[acyl-carrier-protein] reductase (nadph)
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-5973, cis-vaccenate biosynthesis:
    • 4 reactions found over 5 reactions in the full pathway

Reconstruction information

External links

  • Property "Common-name" (as page type) with input value "3-oxoacyl-[acyl-carrier-protein] reductase (nadph)" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
  • Property "Common-name" (as page type) with input value "3-oxo-cis-vaccenoyl-[acyl-carrier protein] reductase" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
  • Property "Common-name" (as page type) with input value "3-oxo-cis-vaccenoyl-[acp] reductase" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.




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