Difference between revisions of "RXN-13228"

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(Created page with "Category:pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=ARGDEG-IV-PWY ARGDEG-IV-PWY] == * taxonomic-range: ** [http://metacyc.org/META/NEW-IMAGE?object=tax-1...")
(Created page with "Category:reaction == Reaction SERINE-O-ACETTRAN-RXN == * direction: ** left-to-right * common-name: ** serine acetyltransferase * ec-number: ** [http://enzyme.expasy.org/E...")
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[[Category:pathway]]
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[[Category:reaction]]
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=ARGDEG-IV-PWY ARGDEG-IV-PWY] ==
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== Reaction SERINE-O-ACETTRAN-RXN ==
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* taxonomic-range:
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* direction:
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** [http://metacyc.org/META/NEW-IMAGE?object=tax-1224 tax-1224]
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** left-to-right
 
* common-name:
 
* common-name:
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** l-arginine degradation viii (arginine oxidase pathway)
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** serine acetyltransferase
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== Reaction(s) found ==
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* ec-number:
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* [[ARG-OXIDATION-RXN]]
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** [http://enzyme.expasy.org/EC/2.3.1.30 ec-2.3.1.30]
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== Reaction(s) not found ==
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== Reaction formula ==
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* [http://metacyc.org/META/NEW-IMAGE?object=1.2.1.54-RXN 1.2.1.54-RXN]
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* 1 [[ACETYL-COA]][c] '''+''' 1 [[SER]][c] '''=>''' 1 [[ACETYLSERINE]][c] '''+''' 1 [[CO-A]][c]
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* [http://metacyc.org/META/NEW-IMAGE?object=4.1.1.75-RXN 4.1.1.75-RXN]
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== Gene(s) associated with this reaction  ==
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* [http://metacyc.org/META/NEW-IMAGE?object=GUANIDINOBUTYRASE-RXN GUANIDINOBUTYRASE-RXN]
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<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
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{{#set: taxonomic-range=tax-1224}}
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* Gene: [[SJ14691]]
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{{#set: common-name=l-arginine degradation viii (arginine oxidase pathway)}}
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** Category: [[annotation]]
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{{#set: nb reaction found=1}}
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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{{#set: completion rate=0.25}}
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** Category: [[orthology]]
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{{#set: nb total reaction=4}}
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*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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* Gene: [[SJ15518]]
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** Category: [[annotation]]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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** Category: [[orthology]]
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*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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* Gene: [[SJ00718]]
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** Category: [[annotation]]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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** Category: [[orthology]]
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*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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* Gene: [[SJ14890]]
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** Category: [[annotation]]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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** Category: [[orthology]]
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*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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</div>
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== Pathway(s) ==
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* [[PWY-7870]], L-cysteine biosynthesis VII (from S-sulfo-L-cysteine):
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** '''2''' reactions found over '''4''' reactions in the full pathway
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* [[PWY-7274]], D-cycloserine biosynthesis:
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** '''1''' reactions found over '''6''' reactions in the full pathway
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* [[CYSTSYN-PWY]], L-cysteine biosynthesis I:
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** '''2''' reactions found over '''2''' reactions in the full pathway
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* [[PWY-6936]], seleno-amino acid biosynthesis (plants):
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** '''5''' reactions found over '''5''' reactions in the full pathway
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== Reconstruction information  ==
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* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
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* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
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* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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== External links  ==
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<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
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* RHEA:
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=24560 24560]
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* LIGAND-RXN:
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** [http://www.genome.jp/dbget-bin/www_bget?R00586 R00586]
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* UNIPROT:
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** [http://www.uniprot.org/uniprot/Q39533 Q39533]
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** [http://www.uniprot.org/uniprot/Q06750 Q06750]
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** [http://www.uniprot.org/uniprot/P71405 P71405]
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** [http://www.uniprot.org/uniprot/Q9JR86 Q9JR86]
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** [http://www.uniprot.org/uniprot/Q9PPF6 Q9PPF6]
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** [http://www.uniprot.org/uniprot/P23145 P23145]
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** [http://www.uniprot.org/uniprot/Q9CEI8 Q9CEI8]
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** [http://www.uniprot.org/uniprot/P43886 P43886]
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** [http://www.uniprot.org/uniprot/P32003 P32003]
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** [http://www.uniprot.org/uniprot/P29847 P29847]
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** [http://www.uniprot.org/uniprot/Q42588 Q42588]
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** [http://www.uniprot.org/uniprot/Q39218 Q39218]
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** [http://www.uniprot.org/uniprot/Q42538 Q42538]
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** [http://www.uniprot.org/uniprot/P74089 P74089]
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** [http://www.uniprot.org/uniprot/Q8W2B8 Q8W2B8]
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** [http://www.uniprot.org/uniprot/Q8S895 Q8S895]
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** [http://www.uniprot.org/uniprot/P93544 P93544]
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** [http://www.uniprot.org/uniprot/O69218 O69218]
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** [http://www.uniprot.org/uniprot/O32979 O32979]
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** [http://www.uniprot.org/uniprot/P0A9D4 P0A9D4]
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</div>
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{{#set: direction=left-to-right}}
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{{#set: common-name=serine acetyltransferase}}
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{{#set: ec-number=ec-2.3.1.30}}
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{{#set: nb gene associated=4}}
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{{#set: nb pathway associated=4}}
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{{#set: reconstruction category=annotation|orthology}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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{{#set: reconstruction comment=n.a}}
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{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus|output_pantograph_nannochloropsis_salina|output_pantograph_arabidopsis_thaliana}}

Revision as of 20:46, 18 December 2020

Reaction SERINE-O-ACETTRAN-RXN

  • direction:
    • left-to-right
  • common-name:
    • serine acetyltransferase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-7870, L-cysteine biosynthesis VII (from S-sulfo-L-cysteine):
    • 2 reactions found over 4 reactions in the full pathway
  • PWY-7274, D-cycloserine biosynthesis:
    • 1 reactions found over 6 reactions in the full pathway
  • CYSTSYN-PWY, L-cysteine biosynthesis I:
    • 2 reactions found over 2 reactions in the full pathway
  • PWY-6936, seleno-amino acid biosynthesis (plants):
    • 5 reactions found over 5 reactions in the full pathway

Reconstruction information

External links





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