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| Line 1: |
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| | [[Category:reaction]] | | [[Category:reaction]] |
| − | == Reaction [http://metacyc.org/META/NEW-IMAGE?object=DUTP-PYROP-RXN DUTP-PYROP-RXN] == | + | == Reaction RXN-17131 == |
| | * direction: | | * direction: |
| | ** left-to-right | | ** left-to-right |
| | * common-name: | | * common-name: |
| − | ** nucleotide diphosphatase | + | ** nπ-phospho-l-histidine phosphatase |
| − | ** deoxyuridine triphosphatase
| |
| | * ec-number: | | * ec-number: |
| − | ** [http://enzyme.expasy.org/EC/3.6.1.23 ec-3.6.1.23] | + | ** [http://enzyme.expasy.org/EC/3.9.1.3 ec-3.9.1.3] |
| − | ** [http://enzyme.expasy.org/EC/3.6.1.9 ec-3.6.1.9]
| |
| | == Reaction formula == | | == Reaction formula == |
| − | * 1 [[DUTP]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[DUMP]][c] '''+''' 1 [[PPI]][c] '''+''' 1 [[PROTON]][c] | + | * 1 [[Protein-pi-phospho-L-histidines]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[Pi]][c] '''+''' 1 [[Protein-Histidines]][c] |
| | == Gene(s) associated with this reaction == | | == Gene(s) associated with this reaction == |
| − | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
| + | * Gene: [[SJ06007]] |
| − | * Gene: [[SJ04934]]
| |
| − | ** Category: [[annotation]]
| |
| − | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
| |
| − | * Gene: [[SJ22529]]
| |
| − | ** Category: [[annotation]]
| |
| − | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
| |
| − | * Gene: [[SJ08998]]
| |
| − | ** Category: [[annotation]]
| |
| − | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
| |
| − | * Gene: [[SJ07337]]
| |
| − | ** Category: [[annotation]]
| |
| − | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
| |
| − | * Gene: [[SJ12893]] | |
| | ** Category: [[annotation]] | | ** Category: [[annotation]] |
| | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a |
| − | * Gene: [[SJ08856]]
| |
| − | ** Category: [[annotation]]
| |
| − | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
| |
| − | * Gene: [[SJ19894]]
| |
| − | ** Category: [[annotation]]
| |
| − | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
| |
| − | ** Category: [[orthology]]
| |
| − | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
| − | * Gene: [[SJ19893]]
| |
| − | ** Category: [[annotation]]
| |
| − | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
| |
| − | ** Category: [[orthology]]
| |
| − | *** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
| − | * Gene: [[SJ12166]]
| |
| − | ** Category: [[annotation]]
| |
| − | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
| |
| − | </div>
| |
| | == Pathway(s) == | | == Pathway(s) == |
| − | * [[PWY-7187]], pyrimidine deoxyribonucleotides de novo biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7187 PWY-7187]
| |
| − | ** '''6''' reactions found over '''7''' reactions in the full pathway
| |
| − | * [[PWY0-166]], superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli): [http://metacyc.org/META/NEW-IMAGE?object=PWY0-166 PWY0-166]
| |
| − | ** '''14''' reactions found over '''13''' reactions in the full pathway
| |
| − | * [[PWY-7206]], pyrimidine deoxyribonucleotides dephosphorylation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7206 PWY-7206]
| |
| − | ** '''2''' reactions found over '''3''' reactions in the full pathway
| |
| − | * [[PWY-7184]], pyrimidine deoxyribonucleotides de novo biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7184 PWY-7184]
| |
| − | ** '''9''' reactions found over '''9''' reactions in the full pathway
| |
| − | * [[PWY-6545]], pyrimidine deoxyribonucleotides de novo biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6545 PWY-6545]
| |
| − | ** '''8''' reactions found over '''9''' reactions in the full pathway
| |
| | == Reconstruction information == | | == Reconstruction information == |
| − | * category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
| |
| − | * category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
| |
| | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a |
| | == External links == | | == External links == |
| − | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
| |
| | * RHEA: | | * RHEA: |
| − | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10249 10249] | + | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=47965 47965] |
| − | * LIGAND-RXN:
| |
| − | ** [http://www.genome.jp/dbget-bin/www_bget?R02100 R02100]
| |
| − | * UNIPROT:
| |
| − | ** [http://www.uniprot.org/uniprot/Q89932 Q89932]
| |
| − | ** [http://www.uniprot.org/uniprot/P33316 P33316]
| |
| − | ** [http://www.uniprot.org/uniprot/O15923 O15923]
| |
| − | ** [http://www.uniprot.org/uniprot/Q9PMK9 Q9PMK9]
| |
| − | ** [http://www.uniprot.org/uniprot/Q9Z9C2 Q9Z9C2]
| |
| − | ** [http://www.uniprot.org/uniprot/Q9JUW1 Q9JUW1]
| |
| − | ** [http://www.uniprot.org/uniprot/P43792 P43792]
| |
| − | ** [http://www.uniprot.org/uniprot/P32518 P32518]
| |
| − | ** [http://www.uniprot.org/uniprot/P68635 P68635]
| |
| − | ** [http://www.uniprot.org/uniprot/P68634 P68634]
| |
| − | ** [http://www.uniprot.org/uniprot/Q76RE7 Q76RE7]
| |
| − | ** [http://www.uniprot.org/uniprot/P03195 P03195]
| |
| − | ** [http://www.uniprot.org/uniprot/Q89662 Q89662]
| |
| − | ** [http://www.uniprot.org/uniprot/Q00030 Q00030]
| |
| − | ** [http://www.uniprot.org/uniprot/P33317 P33317]
| |
| − | ** [http://www.uniprot.org/uniprot/Q45920 Q45920]
| |
| − | ** [http://www.uniprot.org/uniprot/P43058 P43058]
| |
| − | ** [http://www.uniprot.org/uniprot/O80091 O80091]
| |
| − | ** [http://www.uniprot.org/uniprot/O36404 O36404]
| |
| − | ** [http://www.uniprot.org/uniprot/O41033 O41033]
| |
| − | ** [http://www.uniprot.org/uniprot/Q9YML1 Q9YML1]
| |
| − | ** [http://www.uniprot.org/uniprot/O39251 O39251]
| |
| − | ** [http://www.uniprot.org/uniprot/O01934 O01934]
| |
| − | ** [http://www.uniprot.org/uniprot/P10234 P10234]
| |
| − | ** [http://www.uniprot.org/uniprot/P06968 P06968]
| |
| − | ** [http://www.uniprot.org/uniprot/P09254 P09254]
| |
| − | ** [http://www.uniprot.org/uniprot/P28892 P28892]
| |
| − | ** [http://www.uniprot.org/uniprot/P28893 P28893]
| |
| − | </div>
| |
| | {{#set: direction=left-to-right}} | | {{#set: direction=left-to-right}} |
| − | {{#set: common-name=nucleotide diphosphatase|deoxyuridine triphosphatase}} | + | {{#set: common-name=nπ-phospho-l-histidine phosphatase}} |
| − | {{#set: ec-number=ec-3.6.1.9|ec-3.6.1.23}} | + | {{#set: ec-number=ec-3.9.1.3}} |
| − | {{#set: nb gene associated=9}} | + | {{#set: nb gene associated=1}} |
| − | {{#set: nb pathway associated=5}} | + | {{#set: nb pathway associated=0}} |
| − | {{#set: reconstruction category=annotation|orthology}} | + | {{#set: reconstruction category=annotation}} |
| − | {{#set: reconstruction tool=pantograph|pathwaytools}} | + | {{#set: reconstruction tool=pathwaytools}} |
| | {{#set: reconstruction comment=n.a}} | | {{#set: reconstruction comment=n.a}} |
| − | {{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus|output_pantograph_arabidopsis_thaliana}} | + | {{#set: reconstruction source=saccharina_japonica_genome}} |
