Difference between revisions of "RXN-13296"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12263 RXN-12263] == * direction: ** left-to-right * common-name: ** farnesyl-diphosphate farnes...")
 
(Created page with "Category:reaction == Reaction RXN-13296 == * direction: ** left-to-right * common-name: ** 3-oxo-cerotoyl-coa synthase * ec-number: ** [http://enzyme.expasy.org/EC/2.3.1.1...")
 
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12263 RXN-12263] ==
+
== Reaction RXN-13296 ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** farnesyl-diphosphate farnesyltransferase
+
** 3-oxo-cerotoyl-coa synthase
−
** presqualene diphosphate synthase
 
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.5.1.103 ec-2.5.1.103]
+
** [http://enzyme.expasy.org/EC/2.3.1.199 ec-2.3.1.199]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 2 [[FARNESYL-PP]][c] '''=>''' 1 [[CPD-465]][c] '''+''' 1 [[PPI]][c]
+
* 1 [[CPD-10280]][c] '''+''' 1 [[MALONYL-COA]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[CO-A]][c] '''+''' 1 [[CPD-14274]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ13532]]
+
* Gene: [[SJ11672]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
** Category: [[orthology]]
+
* Gene: [[SJ00613]]
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ02885]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ06616]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ19629]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-5875]], staphyloxanthin biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5875 PWY-5875]
+
* [[PWY-7036]], very long chain fatty acid biosynthesis II:
−
** '''1''' reactions found over '''9''' reactions in the full pathway
+
** '''14''' reactions found over '''16''' reactions in the full pathway
−
* [[PWY-6767]], 4,4'-diapolycopenedioate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6767 PWY-6767]
 
−
** '''1''' reactions found over '''9''' reactions in the full pathway
 
−
* [[PWY-7072]], hopanoid biosynthesis (bacteria): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7072 PWY-7072]
 
−
** '''1''' reactions found over '''14''' reactions in the full pathway
 
−
* [[PWY-6105]], botryococcenes and methylated squalene biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6105 PWY-6105]
 
−
** '''2''' reactions found over '''9''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
−
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
* UNIPROT:
+
* METANETX-RXN : MNXR118002
−
** [http://www.uniprot.org/uniprot/O69445 O69445]
 
−
** [http://www.uniprot.org/uniprot/P36596 P36596]
 
−
** [http://www.uniprot.org/uniprot/O65688 O65688]
 
−
** [http://www.uniprot.org/uniprot/O23118 O23118]
 
−
** [http://www.uniprot.org/uniprot/O22107 O22107]
 
−
** [http://www.uniprot.org/uniprot/Q40472 Q40472]
 
−
** [http://www.uniprot.org/uniprot/O22106 O22106]
 
−
** [http://www.uniprot.org/uniprot/P53800 P53800]
 
−
** [http://www.uniprot.org/uniprot/P53799 P53799]
 
−
** [http://www.uniprot.org/uniprot/P53798 P53798]
 
−
** [http://www.uniprot.org/uniprot/P29704 P29704]
 
−
** [http://www.uniprot.org/uniprot/Q04903 Q04903]
 
−
** [http://www.uniprot.org/uniprot/Q42761 Q42761]
 
−
** [http://www.uniprot.org/uniprot/Q42760 Q42760]
 
−
** [http://www.uniprot.org/uniprot/P37268 P37268]
 
−
** [http://www.uniprot.org/uniprot/Q02769 Q02769]
 
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R00702 R00702]
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=farnesyl-diphosphate farnesyltransferase|presqualene diphosphate synthase}}
+
{{#set: common-name=3-oxo-cerotoyl-coa synthase}}
−
{{#set: ec-number=ec-2.5.1.103}}
+
{{#set: ec-number=ec-2.3.1.199}}
−
{{#set: nb gene associated=2}}
+
{{#set: nb gene associated=4}}
−
{{#set: nb pathway associated=4}}
+
{{#set: nb pathway associated=1}}
−
{{#set: reconstruction category=orthology|annotation}}
+
{{#set: reconstruction category=annotation}}
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
+
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus|output_pantograph_nannochloropsis_salina}}
+
{{#set: reconstruction source=saccharina_japonica_genome}}

Latest revision as of 11:19, 18 March 2021

Reaction RXN-13296

  • direction:
    • left-to-right
  • common-name:
    • 3-oxo-cerotoyl-coa synthase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-7036, very long chain fatty acid biosynthesis II:
    • 14 reactions found over 16 reactions in the full pathway

Reconstruction information

External links

  • METANETX-RXN : MNXR118002





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