Difference between revisions of "RXN-13323"

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(Created page with "Category:reaction == Reaction GTP-CYCLOHYDRO-I-RXN == * direction: ** left-to-right * common-name: ** gtp cyclohydrolase * ec-number: ** [http://enzyme.expasy.org/EC/3.5.4...")
(Created page with "Category:reaction == Reaction RXN-8790 == * direction: ** reversible * common-name: ** dihydrogeranylgeranyl-bacteriochlorophyll a reductase == Reaction formula == * 1 C...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction GTP-CYCLOHYDRO-I-RXN ==
+
== Reaction RXN-8790 ==
 
* direction:
 
* direction:
−
** left-to-right
+
** reversible
 
* common-name:
 
* common-name:
−
** gtp cyclohydrolase
+
** dihydrogeranylgeranyl-bacteriochlorophyll a reductase
−
* ec-number:
 
−
** [http://enzyme.expasy.org/EC/3.5.4.16 ec-3.5.4.16]
 
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[GTP]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[DIHYDRONEOPTERIN-P3]][c] '''+''' 1 [[FORMATE]][c] '''+''' 1 [[PROTON]][c]
+
* 1 [[CPD-9090]][c] '''+''' 1 [[NADP]][c] '''<=>''' 1 [[CPD-9089]][c] '''+''' 1 [[NADPH]][c] '''+''' 1 [[PROTON]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ00877]]
+
* Gene: [[SJ15264]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY0-1433]], tetrahydromonapterin biosynthesis:
+
* [[PWY-5526]], bacteriochlorophyll a biosynthesis:
−
** '''1''' reactions found over '''4''' reactions in the full pathway
+
** '''5''' reactions found over '''13''' reactions in the full pathway
−
* [[PWY-7442]], drosopterin and aurodrosopterin biosynthesis:
 
−
** '''3''' reactions found over '''7''' reactions in the full pathway
 
−
* [[PWY-6703]], preQ0 biosynthesis:
 
−
** '''1''' reactions found over '''4''' reactions in the full pathway
 
−
* [[PWY-7852]], 6-hydroxymethyl-dihydropterin diphosphate biosynthesis IV (Plasmodium):
 
−
** '''2''' reactions found over '''3''' reactions in the full pathway
 
−
* [[PWY-6147]], 6-hydroxymethyl-dihydropterin diphosphate biosynthesis I:
 
−
** '''5''' reactions found over '''5''' reactions in the full pathway
 
−
* [[PWY-5664]], erythro-tetrahydrobiopterin biosynthesis II:
 
−
** '''2''' reactions found over '''4''' reactions in the full pathway
 
−
* [[PWY-6983]], threo-tetrahydrobiopterin biosynthesis:
 
−
** '''2''' reactions found over '''4''' reactions in the full pathway
 
−
* [[PWY-5663]], erythro-tetrahydrobiopterin biosynthesis I:
 
−
** '''3''' reactions found over '''4''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
{{#set: direction=reversible}}
−
* RHEA:
+
{{#set: common-name=dihydrogeranylgeranyl-bacteriochlorophyll a reductase}}
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17473 17473]
 
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R00424 R00424]
 
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/P19465 P19465]
 
−
** [http://www.uniprot.org/uniprot/P22288 P22288]
 
−
** [http://www.uniprot.org/uniprot/P43866 P43866]
 
−
** [http://www.uniprot.org/uniprot/P51594 P51594]
 
−
** [http://www.uniprot.org/uniprot/P64207 P64207]
 
−
** [http://www.uniprot.org/uniprot/Q9CGE3 Q9CGE3]
 
−
** [http://www.uniprot.org/uniprot/O66603 O66603]
 
−
** [http://www.uniprot.org/uniprot/P56462 P56462]
 
−
** [http://www.uniprot.org/uniprot/P0A6T5 P0A6T5]
 
−
** [http://www.uniprot.org/uniprot/P50141 P50141]
 
−
** [http://www.uniprot.org/uniprot/P30793 P30793]
 
−
** [http://www.uniprot.org/uniprot/P51601 P51601]
 
−
** [http://www.uniprot.org/uniprot/Q05915 Q05915]
 
−
** [http://www.uniprot.org/uniprot/P51597 P51597]
 
−
** [http://www.uniprot.org/uniprot/P51600 P51600]
 
−
** [http://www.uniprot.org/uniprot/Q94465 Q94465]
 
−
** [http://www.uniprot.org/uniprot/Q55759 Q55759]
 
−
</div>
 
−
{{#set: direction=left-to-right}}
 
−
{{#set: common-name=gtp cyclohydrolase}}
 
−
{{#set: ec-number=ec-3.5.4.16}}
 
 
{{#set: nb gene associated=1}}
 
{{#set: nb gene associated=1}}
−
{{#set: nb pathway associated=8}}
+
{{#set: nb pathway associated=1}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction category=annotation}}
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
+
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=saccharina_japonica_genome}}

Revision as of 11:25, 15 January 2021

Reaction RXN-8790

  • direction:
    • reversible
  • common-name:
    • dihydrogeranylgeranyl-bacteriochlorophyll a reductase

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-5526, bacteriochlorophyll a biosynthesis:
    • 5 reactions found over 13 reactions in the full pathway

Reconstruction information

External links

Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=RXN-13323&oldid=116113"