Difference between revisions of "RXN-13404"

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(Created page with "Category:reaction == Reaction RXN-8642 == <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> * direction: ** reversible * common-name:...")
(Created page with "Category:reaction == Reaction RXN-13404 == * direction: ** left-to-right * common-name: ** sarcosine n-methyltransferase * ec-number: ** [http://enzyme.expasy.org/EC/2.1.1...")
 
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction RXN-8642 ==
+
== Reaction RXN-13404 ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
 
* common-name:
 
* common-name:
−
** nadp-dependent isocitrate dehydrogenase
+
** sarcosine n-methyltransferase
−
* synonymous:
+
* ec-number:
−
** oxalsuccinic decarboxylase
+
** [http://enzyme.expasy.org/EC/2.1.1.156 ec-2.1.1.156]
−
** nadp-linked isocitrate dehydrogenase
 
−
** idp1
 
−
** nadp+-linked isocitrate dehydrogenase
 
−
** idp3
 
−
** nadp+-icdh
 
−
** idh (ambiguous)
 
−
** nadp+-idh
 
−
** idp2
 
−
** triphosphopyridine nucleotide-linked isocitrate dehydrogenase-oxalosuccinate carboxylase
 
−
** idp
 
−
** isocitrate (nicotinamide adenine dinucleotide phosphate) dehydrogenase
 
−
** isocitrate (nadp) dehydrogenase
 
−
** nadp-dependent isocitric dehydrogenase
 
−
** isocitrate dehydrogenase (nadp-dependent)
 
−
** dual-cofactor-specific isocitrate dehydrogenase
 
−
** nadp isocitric dehydrogenase
 
−
** nadp-specific isocitrate dehydrogenase
 
−
</div>
 
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[OXALO-SUCCINATE]][c] '''+''' 1 [[PROTON]][c] '''<=>''' 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[CARBON-DIOXIDE]][c]
+
* 1 [[GLY]][c] '''+''' 2 [[S-ADENOSYLMETHIONINE]][c] '''=>''' 2 [[ADENOSYL-HOMO-CYS]][c] '''+''' 1 [[DIMETHYL-GLYCINE]][c] '''+''' 2 [[PROTON]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ08749]]
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* Gene: [[SJ12119]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ03081]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ11087]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ02539]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ10116]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ02540]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ12116]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ12118]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ12128]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ18177]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ14716]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
** Category: [[orthology]]
+
</div>
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
* METANETX-RXN : MNXR105305
+
* METANETX-RXN : MNXR113443
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R10060 R10060]
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=19384 19384]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=32466 32466]
−
* LIGAND-RXN:
+
{{#set: direction=left-to-right}}
−
** [http://www.genome.jp/dbget-bin/www_bget?R00268 R00268]
+
{{#set: common-name=sarcosine n-methyltransferase}}
−
{{#set: direction=reversible}}
+
{{#set: ec-number=ec-2.1.1.156}}
−
{{#set: common-name=nadp-dependent isocitrate dehydrogenase}}
+
{{#set: nb gene associated=11}}
−
{{#set: synonymous=oxalsuccinic decarboxylase|nadp+-idh|idp1|isocitrate dehydrogenase (nadp-dependent)|isocitrate (nadp) dehydrogenase|nadp-specific isocitrate dehydrogenase|idp|nadp-dependent isocitric dehydrogenase|nadp+-linked isocitrate dehydrogenase|idh (ambiguous)|nadp-linked isocitrate dehydrogenase|idp3|triphosphopyridine nucleotide-linked isocitrate dehydrogenase-oxalosuccinate carboxylase|nadp isocitric dehydrogenase|isocitrate (nicotinamide adenine dinucleotide phosphate) dehydrogenase|nadp+-icdh|dual-cofactor-specific isocitrate dehydrogenase|idp2}}
 
−
{{#set: nb gene associated=1}}
 
 
{{#set: nb pathway associated=0}}
 
{{#set: nb pathway associated=0}}
−
{{#set: reconstruction category=orthology|annotation}}
+
{{#set: reconstruction category=annotation}}
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}
+
{{#set: reconstruction source=saccharina_japonica_genome}}

Latest revision as of 11:21, 18 March 2021

Reaction RXN-13404

  • direction:
    • left-to-right
  • common-name:
    • sarcosine n-methyltransferase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links

  • METANETX-RXN : MNXR113443
  • LIGAND-RXN:
  • RHEA:





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