Difference between revisions of "RXN-13416"

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(Created page with "Category:reaction == Reaction PYRIMSYN3-RXN == * direction: ** left-to-right * common-name: ** phosphohydroxymethylpyrimidine kinase * ec-number: ** [http://enzyme.expasy....")
(Created page with "Category:reaction == Reaction RXN-13416 == * direction: ** left-to-right == Reaction formula == * 1 EIF5A-LYSINE[c] '''+''' 1 N-4-aminobutylidene-enzyme-lysine[c]...")
 
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction PYRIMSYN3-RXN ==
+
== Reaction RXN-13416 ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
−
* common-name:
 
−
** phosphohydroxymethylpyrimidine kinase
 
−
* ec-number:
 
−
** [http://enzyme.expasy.org/EC/2.7.4.7 ec-2.7.4.7]
 
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[AMINO-HYDROXYMETHYL-METHYL-PYR-P]][c] '''+''' 1 [[ATP]][c] '''=>''' 1 [[ADP]][c] '''+''' 1 [[AMINO-HYDROXYMETHYL-METHYLPYRIMIDINE-PP]][c]
+
* 1 [[EIF5A-LYSINE]][c] '''+''' 1 [[N-4-aminobutylidene-enzyme-lysine]][c] '''=>''' 1 [[Deoxyhypusine-Synthase-Lysine]][c] '''+''' 1 [[N-4-aminobutylidene-eIF5A-lysine]][c] '''+''' 1 [[PROTON]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ18183]]
+
* Gene: [[SJ09995]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-6890]], 4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis I:
+
* [[PWY-5905]], hypusine biosynthesis:
−
** '''2''' reactions found over '''2''' reactions in the full pathway
+
** '''5''' reactions found over '''5''' reactions in the full pathway
−
* [[PWY-6910]], hydroxymethylpyrimidine salvage:
 
−
** '''2''' reactions found over '''2''' reactions in the full pathway
 
−
* [[PWY-7357]], thiamine phosphate formation from pyrithiamine and oxythiamine (yeast):
 
−
** '''4''' reactions found over '''6''' reactions in the full pathway
 
−
* [[PWY-7356]], thiamine diphosphate salvage IV (yeast):
 
−
** '''6''' reactions found over '''7''' reactions in the full pathway
 
−
* [[PWY-7282]], 4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis II:
 
−
** '''6''' reactions found over '''10''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
* METANETX-RXN : MNXR103045
+
* METANETX-RXN : MNXR118073
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=19894 19894]
 
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R04509 R04509]
 
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/Q9JTE1 Q9JTE1]
 
−
** [http://www.uniprot.org/uniprot/Q9PNL2 Q9PNL2]
 
−
** [http://www.uniprot.org/uniprot/Q9CI79 Q9CI79]
 
−
** [http://www.uniprot.org/uniprot/Q9CG47 Q9CG47]
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=phosphohydroxymethylpyrimidine kinase}}
 
−
{{#set: ec-number=ec-2.7.4.7}}
 
 
{{#set: nb gene associated=1}}
 
{{#set: nb gene associated=1}}
−
{{#set: nb pathway associated=5}}
+
{{#set: nb pathway associated=1}}
 
{{#set: reconstruction category=orthology|annotation}}
 
{{#set: reconstruction category=orthology|annotation}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_arabidopsis_thaliana|output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}
+
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}

Latest revision as of 11:18, 18 March 2021

Reaction RXN-13416

  • direction:
    • left-to-right

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-5905, hypusine biosynthesis:
    • 5 reactions found over 5 reactions in the full pathway

Reconstruction information

External links

  • METANETX-RXN : MNXR118073




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