Difference between revisions of "RXN-13444"

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(Created page with "Category:reaction == Reaction 3.1.26.5-RXN == * direction: ** left-to-right * common-name: ** ribonuclease * ec-number: ** [http://enzyme.expasy.org/EC/3.1.26.5 ec-3.1.26....")
(Created page with "Category:reaction == Reaction GLUTACONYL-COA-DECARBOXYLASE-RXN == * direction: ** reversible * common-name: ** glutaconyl-coa decarboxylase * ec-number: ** [http://enzyme....")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction 3.1.26.5-RXN ==
+
== Reaction GLUTACONYL-COA-DECARBOXYLASE-RXN ==
 
* direction:
 
* direction:
−
** left-to-right
+
** reversible
 
* common-name:
 
* common-name:
−
** ribonuclease
+
** glutaconyl-coa decarboxylase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/3.1.26.5 ec-3.1.26.5]
+
** [http://enzyme.expasy.org/EC/4.1.1.70 ec-4.1.1.70]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[CPD0-2352]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[CPD0-2353]][c] '''+''' 1 [[tRNA-fragment]][c]
+
* 1 [[GLUTACONYL-COA]][c] '''+''' 1 [[PROTON]][c] '''<=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[CROTONYL-COA]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* Gene: [[SJ07909]]
−
* Gene: [[SJ17442]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ06697]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ09263]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ10376]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ17040]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ11313]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ06336]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ19585]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ04162]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ17384]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ16938]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ07712]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
</div>
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY0-1479]], tRNA processing:
+
* [[PWY-7401]], crotonate fermentation (to acetate and cyclohexane carboxylate):
−
** '''4''' reactions found over '''10''' reactions in the full pathway
+
** '''6''' reactions found over '''15''' reactions in the full pathway
 +
* [[PWY-5177]], glutaryl-CoA degradation:
 +
** '''5''' reactions found over '''5''' reactions in the full pathway
 +
* [[P162-PWY]], L-glutamate degradation V (via hydroxyglutarate):
 +
** '''7''' reactions found over '''11''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
* UNIPROT:
+
* RHEA:
−
** [http://www.uniprot.org/uniprot/Q02773 Q02773]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=23972 23972]
−
** [http://www.uniprot.org/uniprot/P41812 P41812]
+
* LIGAND-RXN:
−
** [http://www.uniprot.org/uniprot/P0A5X8 P0A5X8]
+
** [http://www.genome.jp/dbget-bin/www_bget?R03028 R03028]
−
** [http://www.uniprot.org/uniprot/P48206 P48206]
+
{{#set: direction=reversible}}
−
** [http://www.uniprot.org/uniprot/Q9JW46 Q9JW46]
+
{{#set: common-name=glutaconyl-coa decarboxylase}}
−
** [http://www.uniprot.org/uniprot/Q9PNX5 Q9PNX5]
+
{{#set: ec-number=ec-4.1.1.70}}
−
** [http://www.uniprot.org/uniprot/Q9CJ73 Q9CJ73]
+
{{#set: nb gene associated=1}}
−
** [http://www.uniprot.org/uniprot/P29433 P29433]
+
{{#set: nb pathway associated=3}}
−
** [http://www.uniprot.org/uniprot/P25817 P25817]
+
{{#set: reconstruction category=annotation}}
−
** [http://www.uniprot.org/uniprot/P22835 P22835]
+
{{#set: reconstruction tool=pathwaytools}}
−
** [http://www.uniprot.org/uniprot/P25814 P25814]
 
−
** [http://www.uniprot.org/uniprot/P0A7Y8 P0A7Y8]
 
−
** [http://www.uniprot.org/uniprot/Q55005 Q55005]
 
−
{{#set: direction=left-to-right}}
 
−
{{#set: common-name=ribonuclease}}
 
−
{{#set: ec-number=ec-3.1.26.5}}
 
−
{{#set: nb gene associated=12}}
 
−
{{#set: nb pathway associated=1}}
 
−
{{#set: reconstruction category=annotation|orthology}}
 
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=saccharina_japonica_genome}}

Revision as of 15:01, 5 January 2021

Reaction GLUTACONYL-COA-DECARBOXYLASE-RXN

  • direction:
    • reversible
  • common-name:
    • glutaconyl-coa decarboxylase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-7401, crotonate fermentation (to acetate and cyclohexane carboxylate):
    • 6 reactions found over 15 reactions in the full pathway
  • PWY-5177, glutaryl-CoA degradation:
    • 5 reactions found over 5 reactions in the full pathway
  • P162-PWY, L-glutamate degradation V (via hydroxyglutarate):
    • 7 reactions found over 11 reactions in the full pathway

Reconstruction information

External links





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