Difference between revisions of "RXN-13602"

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(Created page with "Category:reaction == Reaction 2.7.8.11-RXN == * direction: ** left-to-right * common-name: ** phosphatidylinositol synthase * ec-number: ** [http://enzyme.expasy.org/EC/2....")
(Created page with "Category:reaction == Reaction DIAMINOPIMDECARB-RXN == * direction: ** left-to-right * common-name: ** diaminopimelate decarboxylase * ec-number: ** [http://enzyme.expasy.o...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction 2.7.8.11-RXN ==
+
== Reaction DIAMINOPIMDECARB-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** phosphatidylinositol synthase
+
** diaminopimelate decarboxylase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.7.8.11 ec-2.7.8.11]
+
** [http://enzyme.expasy.org/EC/4.1.1.20 ec-4.1.1.20]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[CDPDIACYLGLYCEROL]][c] '''+''' 1 [[MYO-INOSITOL]][c] '''=>''' 1 [[CMP]][c] '''+''' 1 [[L-1-phosphatidyl-inositols]][c] '''+''' 1 [[PROTON]][c]
+
* 1 [[MESO-DIAMINOPIMELATE]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[LYS]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ06043]]
+
* Gene: [[SJ09103]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ06760]]
+
* Gene: [[SJ00674]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ21359]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PHOSLIPSYN2-PWY]], superpathway of phospholipid biosynthesis II (plants):
+
* [[PWY-2942]], L-lysine biosynthesis III:
−
** '''13''' reactions found over '''3''' reactions in the full pathway
+
** '''6''' reactions found over '''7''' reactions in the full pathway
−
* [[PWY-7625]], phosphatidylinositol biosynthesis II (eukaryotes):
+
* [[PWY-5097]], L-lysine biosynthesis VI:
−
** '''1''' reactions found over '''1''' reactions in the full pathway
+
** '''7''' reactions found over '''7''' reactions in the full pathway
−
* [[PWY-6351]], D-myo-inositol (1,4,5)-trisphosphate biosynthesis:
+
* [[DAPLYSINESYN-PWY]], L-lysine biosynthesis I:
−
** '''4''' reactions found over '''5''' reactions in the full pathway
+
** '''7''' reactions found over '''9''' reactions in the full pathway
−
* [[PWY-6352]], 3-phosphoinositide biosynthesis:
+
* [[PWY-2941]], L-lysine biosynthesis II:
−
** '''5''' reactions found over '''8''' reactions in the full pathway
+
** '''6''' reactions found over '''9''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
 +
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=11581 11581]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15102 15102]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R01802 R01802]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00451 R00451]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P06197 P06197]
+
** [http://www.uniprot.org/uniprot/P19572 P19572]
−
** [http://www.uniprot.org/uniprot/P70500 P70500]
+
** [http://www.uniprot.org/uniprot/P0A5M4 P0A5M4]
−
** [http://www.uniprot.org/uniprot/Q8LBA6 Q8LBA6]
+
** [http://www.uniprot.org/uniprot/P44316 P44316]
 +
** [http://www.uniprot.org/uniprot/P56129 P56129]
 +
** [http://www.uniprot.org/uniprot/O67262 O67262]
 +
** [http://www.uniprot.org/uniprot/Q9JWA6 Q9JWA6]
 +
** [http://www.uniprot.org/uniprot/Q9CG26 Q9CG26]
 +
** [http://www.uniprot.org/uniprot/P00861 P00861]
 +
** [http://www.uniprot.org/uniprot/O27390 O27390]
 +
** [http://www.uniprot.org/uniprot/Q9PII5 Q9PII5]
 +
** [http://www.uniprot.org/uniprot/Q58497 Q58497]
 +
** [http://www.uniprot.org/uniprot/O29458 O29458]
 +
** [http://www.uniprot.org/uniprot/P41023 P41023]
 +
** [http://www.uniprot.org/uniprot/P23630 P23630]
 +
** [http://www.uniprot.org/uniprot/P09890 P09890]
 +
** [http://www.uniprot.org/uniprot/Q55484 Q55484]
 +
** [http://www.uniprot.org/uniprot/O05321 O05321]
 +
</div>
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=phosphatidylinositol synthase}}
+
{{#set: common-name=diaminopimelate decarboxylase}}
−
{{#set: ec-number=ec-2.7.8.11}}
+
{{#set: ec-number=ec-4.1.1.20}}
−
{{#set: nb gene associated=2}}
+
{{#set: nb gene associated=3}}
 
{{#set: nb pathway associated=4}}
 
{{#set: nb pathway associated=4}}
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction category=annotation|orthology}}
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}

Revision as of 15:04, 5 January 2021

Reaction DIAMINOPIMDECARB-RXN

  • direction:
    • left-to-right
  • common-name:
    • diaminopimelate decarboxylase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-2942, L-lysine biosynthesis III:
    • 6 reactions found over 7 reactions in the full pathway
  • PWY-5097, L-lysine biosynthesis VI:
    • 7 reactions found over 7 reactions in the full pathway
  • DAPLYSINESYN-PWY, L-lysine biosynthesis I:
    • 7 reactions found over 9 reactions in the full pathway
  • PWY-2941, L-lysine biosynthesis II:
    • 6 reactions found over 9 reactions in the full pathway

Reconstruction information

External links





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