Difference between revisions of "RXN-13603"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-2382 RXN0-2382] == * direction: ** left-to-right * common-name: ** tryptophan synthase * ec-nu...")
(Created page with "Category:reaction == Reaction TransportSeed-PROTON == * direction: ** left-to-right == Reaction formula == * 1.0 PROTON[e] '''=>''' 1.0 PROTON[c] == Gene(s) associ...")
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[[Category:reaction]]
 
[[Category:reaction]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-2382 RXN0-2382] ==
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== Reaction TransportSeed-PROTON ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
−
* common-name:
 
−
** tryptophan synthase
 
−
* ec-number:
 
−
** [http://enzyme.expasy.org/EC/4.2.1.122 ec-4.2.1.122]
 
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[INDOLE]][c] '''+''' 1 [[SER]][c] '''=>''' 1 [[TRP]][c] '''+''' 1 [[WATER]][c]
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* 1.0 [[PROTON]][e] '''=>''' 1.0 [[PROTON]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ09991]]
 
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** Category: [[annotation]]
 
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
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** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
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* Gene: [[SJ16706]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
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* Gene: [[SJ20325]]
 
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** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
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* Gene: [[SJ15468]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
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* Gene: [[SJ10955]]
 
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** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[TRPSYN-PWY]], L-tryptophan biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=TRPSYN-PWY TRPSYN-PWY]
 
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** '''6''' reactions found over '''6''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
+
* category: [[manual]]; source: [[import_from_medium]]; tool: [[curation]]; comment: added to manage seeds from extracellular to cytosol compartment
−
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
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* RHEA:
 
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=26435 26435]
 
−
* LIGAND-RXN:
 
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** [http://www.genome.jp/dbget-bin/www_bget?R00674 R00674]
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
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{{#set: common-name=tryptophan synthase}}
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{{#set: nb gene associated=0}}
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{{#set: ec-number=ec-4.2.1.122}}
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{{#set: nb pathway associated=0}}
−
{{#set: nb gene associated=5}}
+
{{#set: reconstruction category=manual}}
−
{{#set: nb pathway associated=1}}
+
{{#set: reconstruction tool=curation}}
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{{#set: reconstruction category=annotation|orthology}}
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{{#set: reconstruction comment=added to manage seeds from extracellular to cytosol compartment}}
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+
{{#set: reconstruction source=import_from_medium}}
−
{{#set: reconstruction comment=n.a}}
 
−
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|output_pantograph_nannochloropsis_salina|saccharina_japonica_genome}}
 

Revision as of 20:39, 18 December 2020

Reaction TransportSeed-PROTON

  • direction:
    • left-to-right

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links

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