Difference between revisions of "RXN-13605"

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(Created page with "Category:reaction == Reaction GLUC1PURIDYLTRANS-RXN == * direction: ** reversible * common-name: ** utp:glucose-1-phosphate uridylyltransferase * ec-number: ** [http://enz...")
(Created page with "Category:reaction == Reaction DIHYDROXYMETVALDEHYDRAT-RXN == * direction: ** left-to-right * common-name: ** 2,3-dihydroxy-3-methylvalerate dehydratase ** 2,3-dihydroxy-3-...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction GLUC1PURIDYLTRANS-RXN ==
+
== Reaction DIHYDROXYMETVALDEHYDRAT-RXN ==
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
 
* common-name:
 
* common-name:
−
** utp:glucose-1-phosphate uridylyltransferase
+
** 2,3-dihydroxy-3-methylvalerate dehydratase
 +
** 2,3-dihydroxy-3-methylvalerate hydro-lyase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.7.7.64 ec-2.7.7.64]
+
** [http://enzyme.expasy.org/EC/4.2.1.9 ec-4.2.1.9]
−
** [http://enzyme.expasy.org/EC/2.7.7.9 ec-2.7.7.9]
 
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[GLC-1-P]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[UTP]][c] '''<=>''' 1 [[CPD-12575]][c] '''+''' 1 [[PPI]][c]
+
* 1 [[1-KETO-2-METHYLVALERATE]][c] '''=>''' 1 [[2-KETO-3-METHYL-VALERATE]][c] '''+''' 1 [[WATER]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* Gene: [[SJ19719]]
−
* Gene: [[SJ06954]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ08662]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ05850]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ10502]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
Line 31: Line 17:
 
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ18341]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
</div>
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-7817]], type I lipoteichoic acid biosynthesis (S. aureus):
+
* [[PWY-5103]], L-isoleucine biosynthesis III:
−
** '''6''' reactions found over '''16''' reactions in the full pathway
+
** '''3''' reactions found over '''7''' reactions in the full pathway
−
* [[PWY-7238]], sucrose biosynthesis II:
+
* [[ILEUSYN-PWY]], L-isoleucine biosynthesis I (from threonine):
−
** '''5''' reactions found over '''8''' reactions in the full pathway
+
** '''4''' reactions found over '''7''' reactions in the full pathway
−
* [[PWY-6527]], stachyose degradation:
+
* [[PWY-5101]], L-isoleucine biosynthesis II:
−
** '''7''' reactions found over '''7''' reactions in the full pathway
+
** '''4''' reactions found over '''8''' reactions in the full pathway
−
* [[PWY-3801]], sucrose degradation II (sucrose synthase):
+
* [[PWY-5104]], L-isoleucine biosynthesis IV:
−
** '''4''' reactions found over '''5''' reactions in the full pathway
+
** '''2''' reactions found over '''6''' reactions in the full pathway
−
* [[PWY-7343]], UDP-&alpha;-D-glucose biosynthesis I:
 
−
** '''2''' reactions found over '''2''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=19892 19892]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=27695 27695]
−
* PIR:
+
* LIGAND-RXN:
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A40650 A40650]
+
** [http://www.genome.jp/dbget-bin/www_bget?R05070 R05070]
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A41382 A41382]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A56146 A56146]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A64250 A64250]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A64970 A64970]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A75096 A75096]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=D49349 D49349]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=D69184 D69184]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=D70601 D70601]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=E64466 E64466]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=E71913 E71913]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=F59102 F59102]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=F64600 F64600]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=F81300 F81300]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=G64095 G64095]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=G70125 G70125]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=H70446 H70446]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=JC2265 JC2265]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=JC4785 JC4785]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=JC4985 JC4985]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=JX0277 JX0277]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S15298 S15298]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S30007 S30007]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S31431 S31431]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S35692 S35692]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S41533 S41533]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S62599 S62599]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S73501 S73501]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S78541 S78541]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T42521 T42521]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T44841 T44841]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T45453 T45453]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=XNDOU XNDOU]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=XNPOU XNPOU]
 
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/Q05852 Q05852]
+
** [http://www.uniprot.org/uniprot/P55186 P55186]
−
** [http://www.uniprot.org/uniprot/P27897 P27897]
+
** [http://www.uniprot.org/uniprot/Q9JUE0 Q9JUE0]
−
** [http://www.uniprot.org/uniprot/Q48447 Q48447]
+
** [http://www.uniprot.org/uniprot/P05791 P05791]
−
** [http://www.uniprot.org/uniprot/P47691 P47691]
+
** [http://www.uniprot.org/uniprot/Q9UZ03 Q9UZ03]
−
** [http://www.uniprot.org/uniprot/P0AAB6 P0AAB6]
+
** [http://www.uniprot.org/uniprot/P44851 P44851]
−
** [http://www.uniprot.org/uniprot/Q9UZI7 Q9UZI7]
+
** [http://www.uniprot.org/uniprot/Q02139 Q02139]
−
** [http://www.uniprot.org/uniprot/P33696 P33696]
+
** [http://www.uniprot.org/uniprot/Q9PJ98 Q9PJ98]
−
** [http://www.uniprot.org/uniprot/O26731 O26731]
+
** [http://www.uniprot.org/uniprot/P39522 P39522]
−
** [http://www.uniprot.org/uniprot/O05576 O05576]
+
{{#set: direction=left-to-right}}
−
** [http://www.uniprot.org/uniprot/Q58730 Q58730]
+
{{#set: common-name=2,3-dihydroxy-3-methylvalerate dehydratase|2,3-dihydroxy-3-methylvalerate hydro-lyase}}
−
** [http://www.uniprot.org/uniprot/Q9ZLI8 Q9ZLI8]
+
{{#set: ec-number=ec-4.2.1.9}}
−
** [http://www.uniprot.org/uniprot/Q9X364 Q9X364]
+
{{#set: nb gene associated=1}}
−
** [http://www.uniprot.org/uniprot/O25363 O25363]
+
{{#set: nb pathway associated=4}}
−
** [http://www.uniprot.org/uniprot/Q9PMD3 Q9PMD3]
 
−
** [http://www.uniprot.org/uniprot/P44878 P44878]
 
−
** [http://www.uniprot.org/uniprot/O51225 O51225]
 
−
** [http://www.uniprot.org/uniprot/O67602 O67602]
 
−
** [http://www.uniprot.org/uniprot/P0AEP3 P0AEP3]
 
−
** [http://www.uniprot.org/uniprot/Q43772 Q43772]
 
−
** [http://www.uniprot.org/uniprot/P74969 P74969]
 
−
** [http://www.uniprot.org/uniprot/Q07130 Q07130]
 
−
** [http://www.uniprot.org/uniprot/P32861 P32861]
 
−
** [http://www.uniprot.org/uniprot/P19595 P19595]
 
−
** [http://www.uniprot.org/uniprot/Q07131 Q07131]
 
−
** [http://www.uniprot.org/uniprot/P37776 P37776]
 
−
** [http://www.uniprot.org/uniprot/P75124 P75124]
 
−
** [http://www.uniprot.org/uniprot/Q46768 Q46768]
 
−
** [http://www.uniprot.org/uniprot/P78811 P78811]
 
−
** [http://www.uniprot.org/uniprot/Q9RMC3 Q9RMC3]
 
−
** [http://www.uniprot.org/uniprot/Q9Z5G1 Q9Z5G1]
 
−
** [http://www.uniprot.org/uniprot/P08800 P08800]
 
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R00289 R00289]
 
−
</div>
 
−
{{#set: direction=reversible}}
 
−
{{#set: common-name=utp:glucose-1-phosphate uridylyltransferase}}
 
−
{{#set: ec-number=ec-2.7.7.9|ec-2.7.7.64}}
 
−
{{#set: nb gene associated=5}}
 
−
{{#set: nb pathway associated=5}}
 
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction source=output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
 
{{#set: reconstruction source=output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}

Revision as of 19:01, 14 January 2021

Reaction DIHYDROXYMETVALDEHYDRAT-RXN

  • direction:
    • left-to-right
  • common-name:
    • 2,3-dihydroxy-3-methylvalerate dehydratase
    • 2,3-dihydroxy-3-methylvalerate hydro-lyase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-5103, L-isoleucine biosynthesis III:
    • 3 reactions found over 7 reactions in the full pathway
  • ILEUSYN-PWY, L-isoleucine biosynthesis I (from threonine):
    • 4 reactions found over 7 reactions in the full pathway
  • PWY-5101, L-isoleucine biosynthesis II:
    • 4 reactions found over 8 reactions in the full pathway
  • PWY-5104, L-isoleucine biosynthesis IV:
    • 2 reactions found over 6 reactions in the full pathway

Reconstruction information

External links





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