Difference between revisions of "RXN-13605"
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(Created page with "Category:reaction == Reaction TRANS-RXN0-277 == * direction: ** left-to-right * ec-number: ** [http://enzyme.expasy.org/EC/1.6.1.5 ec-1.6.1.5] == Reaction formula == * 1 [...") |
(Created page with "Category:reaction == Reaction CARBPSYN-RXN == * direction: ** left-to-right * common-name: ** carbamoyl phosphate synthetase * ec-number: ** [http://enzyme.expasy.org/EC/6...") |
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Line 1: | Line 1: | ||
[[Category:reaction]] | [[Category:reaction]] | ||
− | == Reaction | + | == Reaction CARBPSYN-RXN == |
* direction: | * direction: | ||
** left-to-right | ** left-to-right | ||
+ | * common-name: | ||
+ | ** carbamoyl phosphate synthetase | ||
* ec-number: | * ec-number: | ||
− | ** [http://enzyme.expasy.org/EC/ | + | ** [http://enzyme.expasy.org/EC/6.3.5.5 ec-6.3.5.5] |
== Reaction formula == | == Reaction formula == | ||
− | * 1 [[ | + | * 2 [[ATP]][c] '''+''' 1 [[GLN]][c] '''+''' 1 [[HCO3]][c] '''+''' 1 [[WATER]][c] '''=>''' 2 [[ADP]][c] '''+''' 1 [[CARBAMOYL-P]][c] '''+''' 1 [[GLT]][c] '''+''' 2 [[PROTON]][c] '''+''' 1 [[Pi]][c] |
== Gene(s) associated with this reaction == | == Gene(s) associated with this reaction == | ||
− | * Gene: [[ | + | * Gene: [[SJ17851]] |
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
** Category: [[orthology]] | ** Category: [[orthology]] | ||
+ | *** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | * Gene: [[SJ15949]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
== Pathway(s) == | == Pathway(s) == | ||
− | * [[ | + | * [[PWY-7400]], L-arginine biosynthesis IV (archaebacteria): |
− | ** ''' | + | ** '''7''' reactions found over '''9''' reactions in the full pathway |
− | * [[ | + | * [[ARGSYN-PWY]], L-arginine biosynthesis I (via L-ornithine): |
− | ** ''' | + | ** '''5''' reactions found over '''4''' reactions in the full pathway |
+ | * [[ARGSYNBSUB-PWY]], L-arginine biosynthesis II (acetyl cycle): | ||
+ | ** '''9''' reactions found over '''9''' reactions in the full pathway | ||
+ | * [[PWY-5154]], L-arginine biosynthesis III (via N-acetyl-L-citrulline): | ||
+ | ** '''8''' reactions found over '''9''' reactions in the full pathway | ||
+ | * [[PWY-5686]], UMP biosynthesis I: | ||
+ | ** '''6''' reactions found over '''6''' reactions in the full pathway | ||
+ | * [[PWY-7790]], UMP biosynthesis II: | ||
+ | ** '''5''' reactions found over '''6''' reactions in the full pathway | ||
+ | * [[PWY-7791]], UMP biosynthesis III: | ||
+ | ** '''5''' reactions found over '''6''' reactions in the full pathway | ||
== Reconstruction information == | == Reconstruction information == | ||
+ | * category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a | ||
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | * category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
+ | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
== External links == | == External links == | ||
+ | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> | ||
* RHEA: | * RHEA: | ||
− | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id= | + | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=18634 18634] |
+ | * LIGAND-RXN: | ||
+ | ** [http://www.genome.jp/dbget-bin/www_bget?R00575 R00575] | ||
+ | * UNIPROT: | ||
+ | ** [http://www.uniprot.org/uniprot/P08955 P08955] | ||
+ | ** [http://www.uniprot.org/uniprot/P13258 P13258] | ||
+ | ** [http://www.uniprot.org/uniprot/P38099 P38099] | ||
+ | ** [http://www.uniprot.org/uniprot/P27708 P27708] | ||
+ | ** [http://www.uniprot.org/uniprot/Q91437 Q91437] | ||
+ | ** [http://www.uniprot.org/uniprot/O28994 O28994] | ||
+ | ** [http://www.uniprot.org/uniprot/P57689 P57689] | ||
+ | ** [http://www.uniprot.org/uniprot/P38098 P38098] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9WZ27 Q9WZ27] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9PMG8 Q9PMG8] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9JXW8 Q9JXW8] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9JVZ6 Q9JVZ6] | ||
+ | ** [http://www.uniprot.org/uniprot/P25993 P25993] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9PIL7 Q9PIL7] | ||
+ | ** [http://www.uniprot.org/uniprot/P25994 P25994] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9JW02 Q9JW02] | ||
+ | ** [http://www.uniprot.org/uniprot/O25577 O25577] | ||
+ | ** [http://www.uniprot.org/uniprot/P52557 P52557] | ||
+ | ** [http://www.uniprot.org/uniprot/P46537 P46537] | ||
+ | ** [http://www.uniprot.org/uniprot/P18185 P18185] | ||
+ | ** [http://www.uniprot.org/uniprot/P07259 P07259] | ||
+ | ** [http://www.uniprot.org/uniprot/P20054 P20054] | ||
+ | ** [http://www.uniprot.org/uniprot/P05990 P05990] | ||
+ | ** [http://www.uniprot.org/uniprot/P14845 P14845] | ||
+ | ** [http://www.uniprot.org/uniprot/Q06950 Q06950] | ||
+ | ** [http://www.uniprot.org/uniprot/Q92115 Q92115] | ||
+ | ** [http://www.uniprot.org/uniprot/Q09794 Q09794] | ||
+ | ** [http://www.uniprot.org/uniprot/P03965 P03965] | ||
+ | ** [http://www.uniprot.org/uniprot/P07258 P07258] | ||
+ | ** [http://www.uniprot.org/uniprot/P00968 P00968] | ||
+ | ** [http://www.uniprot.org/uniprot/P0A6F1 P0A6F1] | ||
+ | ** [http://www.uniprot.org/uniprot/P93345 P93345] | ||
+ | ** [http://www.uniprot.org/uniprot/Q27732 Q27732] | ||
+ | ** [http://www.uniprot.org/uniprot/Q27448 Q27448] | ||
+ | ** [http://www.uniprot.org/uniprot/O50236 O50236] | ||
+ | ** [http://www.uniprot.org/uniprot/O94313 O94313] | ||
+ | ** [http://www.uniprot.org/uniprot/Q59968 Q59968] | ||
+ | ** [http://www.uniprot.org/uniprot/Q59969 Q59969] | ||
+ | ** [http://www.uniprot.org/uniprot/O50301 O50301] | ||
+ | ** [http://www.uniprot.org/uniprot/O50302 O50302] | ||
+ | </div> | ||
{{#set: direction=left-to-right}} | {{#set: direction=left-to-right}} | ||
− | {{#set: ec-number=ec- | + | {{#set: common-name=carbamoyl phosphate synthetase}} |
− | {{#set: nb gene associated= | + | {{#set: ec-number=ec-6.3.5.5}} |
− | {{#set: nb pathway associated= | + | {{#set: nb gene associated=2}} |
− | {{#set: reconstruction category=orthology}} | + | {{#set: nb pathway associated=7}} |
− | {{#set: reconstruction tool=pantograph}} | + | {{#set: reconstruction category=annotation|orthology}} |
+ | {{#set: reconstruction tool=pathwaytools|pantograph}} | ||
{{#set: reconstruction comment=n.a}} | {{#set: reconstruction comment=n.a}} | ||
− | {{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus}} | + | {{#set: reconstruction source=output_pantograph_nannochloropsis_salina|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}} |
Revision as of 15:32, 5 January 2021
Contents
Reaction CARBPSYN-RXN
- direction:
- left-to-right
- common-name:
- carbamoyl phosphate synthetase
- ec-number:
Reaction formula
- 2 ATP[c] + 1 GLN[c] + 1 HCO3[c] + 1 WATER[c] => 2 ADP[c] + 1 CARBAMOYL-P[c] + 1 GLT[c] + 2 PROTON[c] + 1 Pi[c]
Gene(s) associated with this reaction
- Gene: SJ17851
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_nannochloropsis_salina, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
- Gene: SJ15949
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: annotation
Pathway(s)
- PWY-7400, L-arginine biosynthesis IV (archaebacteria):
- 7 reactions found over 9 reactions in the full pathway
- ARGSYN-PWY, L-arginine biosynthesis I (via L-ornithine):
- 5 reactions found over 4 reactions in the full pathway
- ARGSYNBSUB-PWY, L-arginine biosynthesis II (acetyl cycle):
- 9 reactions found over 9 reactions in the full pathway
- PWY-5154, L-arginine biosynthesis III (via N-acetyl-L-citrulline):
- 8 reactions found over 9 reactions in the full pathway
- PWY-5686, UMP biosynthesis I:
- 6 reactions found over 6 reactions in the full pathway
- PWY-7790, UMP biosynthesis II:
- 5 reactions found over 6 reactions in the full pathway
- PWY-7791, UMP biosynthesis III:
- 5 reactions found over 6 reactions in the full pathway
Reconstruction information
- category: orthology; source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
- category: orthology; source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- category: annotation; source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
External links
- RHEA:
- LIGAND-RXN:
- UNIPROT: