Difference between revisions of "RXN-13605"

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(Created page with "Category:reaction == Reaction CARBPSYN-RXN == * direction: ** left-to-right * common-name: ** carbamoyl phosphate synthetase * ec-number: ** [http://enzyme.expasy.org/EC/6...")
(Created page with "Category:reaction == Reaction GLUC1PURIDYLTRANS-RXN == * direction: ** reversible * common-name: ** utp:glucose-1-phosphate uridylyltransferase * ec-number: ** [http://enz...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction CARBPSYN-RXN ==
+
== Reaction GLUC1PURIDYLTRANS-RXN ==
 
* direction:
 
* direction:
−
** left-to-right
+
** reversible
 
* common-name:
 
* common-name:
−
** carbamoyl phosphate synthetase
+
** utp:glucose-1-phosphate uridylyltransferase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/6.3.5.5 ec-6.3.5.5]
+
** [http://enzyme.expasy.org/EC/2.7.7.64 ec-2.7.7.64]
 +
** [http://enzyme.expasy.org/EC/2.7.7.9 ec-2.7.7.9]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 2 [[ATP]][c] '''+''' 1 [[GLN]][c] '''+''' 1 [[HCO3]][c] '''+''' 1 [[WATER]][c] '''=>''' 2 [[ADP]][c] '''+''' 1 [[CARBAMOYL-P]][c] '''+''' 1 [[GLT]][c] '''+''' 2 [[PROTON]][c] '''+''' 1 [[Pi]][c]
+
* 1 [[GLC-1-P]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[UTP]][c] '''<=>''' 1 [[CPD-12575]][c] '''+''' 1 [[PPI]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ17851]]
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* Gene: [[SJ06954]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ08662]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ15949]]
+
* Gene: [[SJ05850]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ10502]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ18341]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
</div>
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-7400]], L-arginine biosynthesis IV (archaebacteria):
+
* [[PWY-7817]], type I lipoteichoic acid biosynthesis (S. aureus):
−
** '''7''' reactions found over '''9''' reactions in the full pathway
+
** '''6''' reactions found over '''16''' reactions in the full pathway
−
* [[ARGSYN-PWY]], L-arginine biosynthesis I (via L-ornithine):
+
* [[PWY-7238]], sucrose biosynthesis II:
−
** '''5''' reactions found over '''4''' reactions in the full pathway
+
** '''5''' reactions found over '''8''' reactions in the full pathway
−
* [[ARGSYNBSUB-PWY]], L-arginine biosynthesis II (acetyl cycle):
+
* [[PWY-6527]], stachyose degradation:
−
** '''9''' reactions found over '''9''' reactions in the full pathway
+
** '''7''' reactions found over '''7''' reactions in the full pathway
−
* [[PWY-5154]], L-arginine biosynthesis III (via N-acetyl-L-citrulline):
+
* [[PWY-3801]], sucrose degradation II (sucrose synthase):
−
** '''8''' reactions found over '''9''' reactions in the full pathway
+
** '''4''' reactions found over '''5''' reactions in the full pathway
−
* [[PWY-5686]], UMP biosynthesis I:
+
* [[PWY-7343]], UDP-&alpha;-D-glucose biosynthesis I:
−
** '''6''' reactions found over '''6''' reactions in the full pathway
+
** '''2''' reactions found over '''2''' reactions in the full pathway
−
* [[PWY-7790]], UMP biosynthesis II:
 
−
** '''5''' reactions found over '''6''' reactions in the full pathway
 
−
* [[PWY-7791]], UMP biosynthesis III:
 
−
** '''5''' reactions found over '''6''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
+
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=18634 18634]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=19892 19892]
 +
* PIR:
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A40650 A40650]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A41382 A41382]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A56146 A56146]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A64250 A64250]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A64970 A64970]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A75096 A75096]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=D49349 D49349]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=D69184 D69184]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=D70601 D70601]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=E64466 E64466]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=E71913 E71913]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=F59102 F59102]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=F64600 F64600]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=F81300 F81300]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=G64095 G64095]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=G70125 G70125]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=H70446 H70446]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=JC2265 JC2265]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=JC4785 JC4785]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=JC4985 JC4985]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=JX0277 JX0277]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S15298 S15298]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S30007 S30007]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S31431 S31431]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S35692 S35692]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S41533 S41533]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S62599 S62599]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S73501 S73501]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S78541 S78541]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T42521 T42521]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T44841 T44841]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T45453 T45453]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=XNDOU XNDOU]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=XNPOU XNPOU]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/Q05852 Q05852]
 +
** [http://www.uniprot.org/uniprot/P27897 P27897]
 +
** [http://www.uniprot.org/uniprot/Q48447 Q48447]
 +
** [http://www.uniprot.org/uniprot/P47691 P47691]
 +
** [http://www.uniprot.org/uniprot/P0AAB6 P0AAB6]
 +
** [http://www.uniprot.org/uniprot/Q9UZI7 Q9UZI7]
 +
** [http://www.uniprot.org/uniprot/P33696 P33696]
 +
** [http://www.uniprot.org/uniprot/O26731 O26731]
 +
** [http://www.uniprot.org/uniprot/O05576 O05576]
 +
** [http://www.uniprot.org/uniprot/Q58730 Q58730]
 +
** [http://www.uniprot.org/uniprot/Q9ZLI8 Q9ZLI8]
 +
** [http://www.uniprot.org/uniprot/Q9X364 Q9X364]
 +
** [http://www.uniprot.org/uniprot/O25363 O25363]
 +
** [http://www.uniprot.org/uniprot/Q9PMD3 Q9PMD3]
 +
** [http://www.uniprot.org/uniprot/P44878 P44878]
 +
** [http://www.uniprot.org/uniprot/O51225 O51225]
 +
** [http://www.uniprot.org/uniprot/O67602 O67602]
 +
** [http://www.uniprot.org/uniprot/P0AEP3 P0AEP3]
 +
** [http://www.uniprot.org/uniprot/Q43772 Q43772]
 +
** [http://www.uniprot.org/uniprot/P74969 P74969]
 +
** [http://www.uniprot.org/uniprot/Q07130 Q07130]
 +
** [http://www.uniprot.org/uniprot/P32861 P32861]
 +
** [http://www.uniprot.org/uniprot/P19595 P19595]
 +
** [http://www.uniprot.org/uniprot/Q07131 Q07131]
 +
** [http://www.uniprot.org/uniprot/P37776 P37776]
 +
** [http://www.uniprot.org/uniprot/P75124 P75124]
 +
** [http://www.uniprot.org/uniprot/Q46768 Q46768]
 +
** [http://www.uniprot.org/uniprot/P78811 P78811]
 +
** [http://www.uniprot.org/uniprot/Q9RMC3 Q9RMC3]
 +
** [http://www.uniprot.org/uniprot/Q9Z5G1 Q9Z5G1]
 +
** [http://www.uniprot.org/uniprot/P08800 P08800]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R00575 R00575]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00289 R00289]
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/P08955 P08955]
 
−
** [http://www.uniprot.org/uniprot/P13258 P13258]
 
−
** [http://www.uniprot.org/uniprot/P38099 P38099]
 
−
** [http://www.uniprot.org/uniprot/P27708 P27708]
 
−
** [http://www.uniprot.org/uniprot/Q91437 Q91437]
 
−
** [http://www.uniprot.org/uniprot/O28994 O28994]
 
−
** [http://www.uniprot.org/uniprot/P57689 P57689]
 
−
** [http://www.uniprot.org/uniprot/P38098 P38098]
 
−
** [http://www.uniprot.org/uniprot/Q9WZ27 Q9WZ27]
 
−
** [http://www.uniprot.org/uniprot/Q9PMG8 Q9PMG8]
 
−
** [http://www.uniprot.org/uniprot/Q9JXW8 Q9JXW8]
 
−
** [http://www.uniprot.org/uniprot/Q9JVZ6 Q9JVZ6]
 
−
** [http://www.uniprot.org/uniprot/P25993 P25993]
 
−
** [http://www.uniprot.org/uniprot/Q9PIL7 Q9PIL7]
 
−
** [http://www.uniprot.org/uniprot/P25994 P25994]
 
−
** [http://www.uniprot.org/uniprot/Q9JW02 Q9JW02]
 
−
** [http://www.uniprot.org/uniprot/O25577 O25577]
 
−
** [http://www.uniprot.org/uniprot/P52557 P52557]
 
−
** [http://www.uniprot.org/uniprot/P46537 P46537]
 
−
** [http://www.uniprot.org/uniprot/P18185 P18185]
 
−
** [http://www.uniprot.org/uniprot/P07259 P07259]
 
−
** [http://www.uniprot.org/uniprot/P20054 P20054]
 
−
** [http://www.uniprot.org/uniprot/P05990 P05990]
 
−
** [http://www.uniprot.org/uniprot/P14845 P14845]
 
−
** [http://www.uniprot.org/uniprot/Q06950 Q06950]
 
−
** [http://www.uniprot.org/uniprot/Q92115 Q92115]
 
−
** [http://www.uniprot.org/uniprot/Q09794 Q09794]
 
−
** [http://www.uniprot.org/uniprot/P03965 P03965]
 
−
** [http://www.uniprot.org/uniprot/P07258 P07258]
 
−
** [http://www.uniprot.org/uniprot/P00968 P00968]
 
−
** [http://www.uniprot.org/uniprot/P0A6F1 P0A6F1]
 
−
** [http://www.uniprot.org/uniprot/P93345 P93345]
 
−
** [http://www.uniprot.org/uniprot/Q27732 Q27732]
 
−
** [http://www.uniprot.org/uniprot/Q27448 Q27448]
 
−
** [http://www.uniprot.org/uniprot/O50236 O50236]
 
−
** [http://www.uniprot.org/uniprot/O94313 O94313]
 
−
** [http://www.uniprot.org/uniprot/Q59968 Q59968]
 
−
** [http://www.uniprot.org/uniprot/Q59969 Q59969]
 
−
** [http://www.uniprot.org/uniprot/O50301 O50301]
 
−
** [http://www.uniprot.org/uniprot/O50302 O50302]
 
 
</div>
 
</div>
−
{{#set: direction=left-to-right}}
+
{{#set: direction=reversible}}
−
{{#set: common-name=carbamoyl phosphate synthetase}}
+
{{#set: common-name=utp:glucose-1-phosphate uridylyltransferase}}
−
{{#set: ec-number=ec-6.3.5.5}}
+
{{#set: ec-number=ec-2.7.7.9|ec-2.7.7.64}}
−
{{#set: nb gene associated=2}}
+
{{#set: nb gene associated=5}}
−
{{#set: nb pathway associated=7}}
+
{{#set: nb pathway associated=5}}
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}

Revision as of 13:15, 14 January 2021

Reaction GLUC1PURIDYLTRANS-RXN

  • direction:
    • reversible
  • common-name:
    • utp:glucose-1-phosphate uridylyltransferase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-7817, type I lipoteichoic acid biosynthesis (S. aureus):
    • 6 reactions found over 16 reactions in the full pathway
  • PWY-7238, sucrose biosynthesis II:
    • 5 reactions found over 8 reactions in the full pathway
  • PWY-6527, stachyose degradation:
    • 7 reactions found over 7 reactions in the full pathway
  • PWY-3801, sucrose degradation II (sucrose synthase):
    • 4 reactions found over 5 reactions in the full pathway
  • PWY-7343, UDP-α-D-glucose biosynthesis I:
    • 2 reactions found over 2 reactions in the full pathway

Reconstruction information

External links





Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=RXN-13605&oldid=88707"