Difference between revisions of "RXN-13616"

From metabolic_network
Jump to navigation Jump to search
(Created page with "Category:pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7854 PWY-7854] == * taxonomic-range: ** [http://metacyc.org/META/NEW-IMAGE?object=tax-2759 tax-27...")
(Created page with "Category:reaction == Reaction RXN-13616 == * direction: ** left-to-right * common-name: ** trans-δ2-decenoyl-coa hydratase ** enoyl-coa hydratase * ec-number: ** [ht...")
 
(7 intermediate revisions by 3 users not shown)
Line 1: Line 1:
−
[[Category:pathway]]
+
[[Category:reaction]]
−
== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7854 PWY-7854] ==
+
== Reaction RXN-13616 ==
−
* taxonomic-range:
+
* direction:
−
** [http://metacyc.org/META/NEW-IMAGE?object=tax-2759 tax-2759]
+
** left-to-right
−
** [http://metacyc.org/META/NEW-IMAGE?object=tax-2 tax-2]
 
−
** [http://metacyc.org/META/NEW-IMAGE?object=tax-2157 tax-2157]
 
 
* common-name:
 
* common-name:
−
** crotonyl-coa/ethylmalonyl-coa/hydroxybutyryl-coa cycle (engineered)
+
** trans-δ2-decenoyl-coa hydratase
−
== Reaction(s) found ==
+
** enoyl-coa hydratase
−
* [[MALSYN-RXN]]
+
* ec-number:
−
== Reaction(s) not found ==
+
** [http://enzyme.expasy.org/EC/4.2.1.17 ec-4.2.1.17]
−
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-11002 RXN-11002]
+
== Reaction formula ==
−
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-8958 RXN-8958]
+
* 1 [[T2-DECENOYL-COA]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[CPD0-2244]][c]
−
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-18387 RXN-18387]
+
== Gene(s) associated with this reaction  ==
−
* [http://metacyc.org/META/NEW-IMAGE?object=METHYLMALONYL-COA-MUT-RXN METHYLMALONYL-COA-MUT-RXN]
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-8890 RXN-8890]
+
* Gene: [[SJ10275]]
−
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-8961 RXN-8961]
+
** Category: [[orthology]]
−
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-15977 RXN-15977]
+
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-16391 RXN-16391]
+
* Gene: [[SJ21390]]
−
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-18381 RXN-18381]
+
** Category: [[annotation]]
−
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-8891 RXN-8891]
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-8957 RXN-8957]
+
** Category: [[orthology]]
−
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-18384 RXN-18384]
+
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-8960 RXN-8960]
+
* Gene: [[SJ03913]]
−
{{#set: taxonomic-range=tax-2759|tax-2157|tax-2}}
+
** Category: [[annotation]]
−
{{#set: common-name=crotonyl-coa/ethylmalonyl-coa/hydroxybutyryl-coa cycle (engineered)}}
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
{{#set: nb reaction found=1}}
+
** Category: [[orthology]]
−
{{#set: completion rate=0.07}}
+
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
{{#set: nb total reaction=14}}
+
* Gene: [[SJ14591]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ00040]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ03584]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ07211]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
</div>
 +
== Pathway(s)  ==
 +
* [[PWY-7094]], fatty acid salvage:
 +
** '''5''' reactions found over '''6''' reactions in the full pathway
 +
== Reconstruction information  ==
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 +
== External links  ==
 +
* METANETX-RXN : MNXR97889
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=31193 31193]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R04744 R04744]
 +
{{#set: direction=left-to-right}}
 +
{{#set: common-name=trans-&delta;2-decenoyl-coa hydratase|enoyl-coa hydratase}}
 +
{{#set: ec-number=ec-4.2.1.17}}
 +
{{#set: nb gene associated=7}}
 +
{{#set: nb pathway associated=1}}
 +
{{#set: reconstruction category=orthology|annotation}}
 +
{{#set: reconstruction tool=pathwaytools|pantograph}}
 +
{{#set: reconstruction comment=n.a}}
 +
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}

Latest revision as of 11:23, 18 March 2021

Reaction RXN-13616

  • direction:
    • left-to-right
  • common-name:
    • trans-δ2-decenoyl-coa hydratase
    • enoyl-coa hydratase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-7094, fatty acid salvage:
    • 5 reactions found over 6 reactions in the full pathway

Reconstruction information

External links

  • METANETX-RXN : MNXR97889
  • RHEA:
  • LIGAND-RXN:





Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=RXN-13616&oldid=142349"