Difference between revisions of "RXN-13675"
Jump to navigation
Jump to search
(Created page with "Category:reaction == Reaction RXN-9661 == * direction: ** left-to-right * common-name: ** trans dodec-2-enoyl-[acp] reductase ** dodecanoyl-[acyl-carrier-protein] reductas...") |
(Created page with "Category:reaction == Reaction GLUTDEHYD-RXN == * direction: ** reversible * common-name: ** glutamate dehydrogenase * ec-number: ** [http://enzyme.expasy.org/EC/1.4.1.4 ec...") |
||
Line 1: | Line 1: | ||
[[Category:reaction]] | [[Category:reaction]] | ||
− | == Reaction RXN | + | == Reaction GLUTDEHYD-RXN == |
* direction: | * direction: | ||
− | ** | + | ** reversible |
* common-name: | * common-name: | ||
− | ** | + | ** glutamate dehydrogenase |
− | |||
* ec-number: | * ec-number: | ||
− | ** [http://enzyme.expasy.org/EC/1. | + | ** [http://enzyme.expasy.org/EC/1.4.1.4 ec-1.4.1.4] |
== Reaction formula == | == Reaction formula == | ||
− | * 1 [[ | + | * 1 [[GLT]][c] '''+''' 1 [[NADP]][c] '''+''' 1 [[WATER]][c] '''<=>''' 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[AMMONIUM]][c] '''+''' 1 [[NADPH]][c] '''+''' 1 [[PROTON]][c] |
== Gene(s) associated with this reaction == | == Gene(s) associated with this reaction == | ||
− | * Gene: [[ | + | * Gene: [[SJ10621]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
− | * Gene: [[ | + | ** Category: [[orthology]] |
+ | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | * Gene: [[SJ20190]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
+ | * Gene: [[SJ10812]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
+ | * Gene: [[SJ10813]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
+ | * Gene: [[SJ20174]] | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
Line 20: | Line 30: | ||
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
== Pathway(s) == | == Pathway(s) == | ||
− | * [[PWY- | + | * [[GLUTSYNIII-PWY]], L-glutamate biosynthesis III: |
− | ** ''' | + | ** '''1''' reactions found over '''1''' reactions in the full pathway |
+ | * [[PWY-5675]], nitrate reduction V (assimilatory): | ||
+ | ** '''4''' reactions found over '''4''' reactions in the full pathway | ||
+ | * [[PWY490-3]], nitrate reduction VI (assimilatory): | ||
+ | ** '''3''' reactions found over '''4''' reactions in the full pathway | ||
+ | * [[PWY-5913]], partial TCA cycle (obligate autotrophs): | ||
+ | ** '''10''' reactions found over '''11''' reactions in the full pathway | ||
== Reconstruction information == | == Reconstruction information == | ||
+ | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | * category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
− | |||
== External links == | == External links == | ||
− | {{#set: direction= | + | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> |
− | {{#set: common-name= | + | * RHEA: |
− | {{#set: ec-number=ec-1. | + | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=11615 11615] |
− | {{#set: nb gene associated= | + | * LIGAND-RXN: |
− | {{#set: nb pathway associated= | + | ** [http://www.genome.jp/dbget-bin/www_bget?R00248 R00248] |
+ | * UNIPROT: | ||
+ | ** [http://www.uniprot.org/uniprot/P07262 P07262] | ||
+ | ** [http://www.uniprot.org/uniprot/P15111 P15111] | ||
+ | ** [http://www.uniprot.org/uniprot/P28724 P28724] | ||
+ | ** [http://www.uniprot.org/uniprot/P43793 P43793] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9JT56 Q9JT56] | ||
+ | ** [http://www.uniprot.org/uniprot/P00370 P00370] | ||
+ | ** [http://www.uniprot.org/uniprot/P00369 P00369] | ||
+ | ** [http://www.uniprot.org/uniprot/P29507 P29507] | ||
+ | ** [http://www.uniprot.org/uniprot/P28998 P28998] | ||
+ | ** [http://www.uniprot.org/uniprot/P29051 P29051] | ||
+ | ** [http://www.uniprot.org/uniprot/P31026 P31026] | ||
+ | ** [http://www.uniprot.org/uniprot/P39475 P39475] | ||
+ | ** [http://www.uniprot.org/uniprot/P39708 P39708] | ||
+ | ** [http://www.uniprot.org/uniprot/P54387 P54387] | ||
+ | ** [http://www.uniprot.org/uniprot/P54386 P54386] | ||
+ | ** [http://www.uniprot.org/uniprot/P95544 P95544] | ||
+ | ** [http://www.uniprot.org/uniprot/P78804 P78804] | ||
+ | </div> | ||
+ | {{#set: direction=reversible}} | ||
+ | {{#set: common-name=glutamate dehydrogenase}} | ||
+ | {{#set: ec-number=ec-1.4.1.4}} | ||
+ | {{#set: nb gene associated=5}} | ||
+ | {{#set: nb pathway associated=4}} | ||
{{#set: reconstruction category=annotation|orthology}} | {{#set: reconstruction category=annotation|orthology}} | ||
{{#set: reconstruction tool=pathwaytools|pantograph}} | {{#set: reconstruction tool=pathwaytools|pantograph}} | ||
{{#set: reconstruction comment=n.a}} | {{#set: reconstruction comment=n.a}} | ||
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}} | {{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}} |
Revision as of 11:23, 15 January 2021
Contents
Reaction GLUTDEHYD-RXN
- direction:
- reversible
- common-name:
- glutamate dehydrogenase
- ec-number:
Reaction formula
- 1 GLT[c] + 1 NADP[c] + 1 WATER[c] <=> 1 2-KETOGLUTARATE[c] + 1 AMMONIUM[c] + 1 NADPH[c] + 1 PROTON[c]
Gene(s) associated with this reaction
- Gene: SJ10621
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
- Gene: SJ20190
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: annotation
- Gene: SJ10812
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: annotation
- Gene: SJ10813
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: annotation
- Gene: SJ20174
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
Pathway(s)
- GLUTSYNIII-PWY, L-glutamate biosynthesis III:
- 1 reactions found over 1 reactions in the full pathway
- PWY-5675, nitrate reduction V (assimilatory):
- 4 reactions found over 4 reactions in the full pathway
- PWY490-3, nitrate reduction VI (assimilatory):
- 3 reactions found over 4 reactions in the full pathway
- PWY-5913, partial TCA cycle (obligate autotrophs):
- 10 reactions found over 11 reactions in the full pathway
Reconstruction information
- category: annotation; source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- category: orthology; source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
External links