Difference between revisions of "RXN-13709"

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(Created page with "Category:reaction == Reaction ARGINASE-RXN == * direction: ** reversible * common-name: ** arginase * ec-number: ** [http://enzyme.expasy.org/EC/3.5.3.1 ec-3.5.3.1] == Rea...")
(Created page with "Category:reaction == Reaction PEPCARBOX-RXN == * direction: ** left-to-right * common-name: ** phosphoenolpyruvate carboxylase * ec-number: ** [http://enzyme.expasy.org/EC...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction ARGINASE-RXN ==
+
== Reaction PEPCARBOX-RXN ==
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
 
* common-name:
 
* common-name:
−
** arginase
+
** phosphoenolpyruvate carboxylase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/3.5.3.1 ec-3.5.3.1]
+
** [http://enzyme.expasy.org/EC/4.1.1.31 ec-4.1.1.31]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[ARG]][c] '''+''' 1 [[WATER]][c] '''<=>''' 1 [[L-ORNITHINE]][c] '''+''' 1 [[UREA]][c]
+
* 1 [[HCO3]][c] '''+''' 1 [[PHOSPHO-ENOL-PYRUVATE]][c] '''=>''' 1 [[OXALACETIC_ACID]][c] '''+''' 1 [[Pi]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ12906]]
+
* Gene: [[SJ04004]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ00773]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-6922]], L-N&delta;-acetylornithine biosynthesis:
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* [[PWY-241]], C4 photosynthetic carbon assimilation cycle, NADP-ME type:
 
** '''5''' reactions found over '''7''' reactions in the full pathway
 
** '''5''' reactions found over '''7''' reactions in the full pathway
−
* [[PWY-4984]], urea cycle:
+
* [[PWY-5913]], partial TCA cycle (obligate autotrophs):
−
** '''5''' reactions found over '''5''' reactions in the full pathway
+
** '''10''' reactions found over '''8''' reactions in the full pathway
−
* [[ARG-GLU-PWY]], L-arginine degradation VII (arginase 3 pathway):
+
* [[PWY-6142]], gluconeogenesis II (Methanobacterium thermoautotrophicum):
 +
** '''10''' reactions found over '''13''' reactions in the full pathway
 +
* [[P23-PWY]], reductive TCA cycle I:
 +
** '''9''' reactions found over '''12''' reactions in the full pathway
 +
* [[PWYQT-4429]], CO2 fixation into oxaloacetate (anaplerotic):
 
** '''2''' reactions found over '''2''' reactions in the full pathway
 
** '''2''' reactions found over '''2''' reactions in the full pathway
−
* [[PWY-6305]], superpathway of putrescine biosynthesis:
+
* [[PWY-6146]], Methanobacterium thermoautotrophicum biosynthetic metabolism:
−
** '''4''' reactions found over '''n.a''' reactions in the full pathway
+
** '''9''' reactions found over '''2''' reactions in the full pathway
−
* [[ARG-PRO-PWY]], L-arginine degradation VI (arginase 2 pathway):
+
* [[FERMENTATION-PWY]], mixed acid fermentation:
−
** '''3''' reactions found over '''4''' reactions in the full pathway
+
** '''11''' reactions found over '''16''' reactions in the full pathway
−
* [[ARGASEDEG-PWY]], L-arginine degradation I (arginase pathway):
+
* [[PWY-7124]], ethene biosynthesis V (engineered):
−
** '''3''' reactions found over '''3''' reactions in the full pathway
+
** '''8''' reactions found over '''8''' reactions in the full pathway
−
* [[CITRULBIO-PWY]], L-citrulline biosynthesis:
+
* [[PWY-6549]], L-glutamine biosynthesis III:
−
** '''7''' reactions found over '''8''' reactions in the full pathway
+
** '''8''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-1622]], formaldehyde assimilation I (serine pathway):
 +
** '''6''' reactions found over '''13''' reactions in the full pathway
 +
* [[PWY-7117]], C4 photosynthetic carbon assimilation cycle, PEPCK type:
 +
** '''10''' reactions found over '''14''' reactions in the full pathway
 +
* [[PWY-7115]], C4 photosynthetic carbon assimilation cycle, NAD-ME type:
 +
** '''9''' reactions found over '''11''' reactions in the full pathway
 +
</div>
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
* RHEA:
+
* METANETX-RXN : MNXR116110
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=20572 20572]
 
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R00551 R00551]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00345 R00345]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P05089 P05089]
+
** [http://www.uniprot.org/uniprot/P28594 P28594]
−
** [http://www.uniprot.org/uniprot/P07824 P07824]
+
** [http://www.uniprot.org/uniprot/P43920 P43920]
−
** [http://www.uniprot.org/uniprot/P40906 P40906]
+
** [http://www.uniprot.org/uniprot/P29195 P29195]
−
** [http://www.uniprot.org/uniprot/Q7M0Z3 Q7M0Z3]
+
** [http://www.uniprot.org/uniprot/P51059 P51059]
−
** [http://www.uniprot.org/uniprot/P14012 P14012]
+
** [http://www.uniprot.org/uniprot/P00864 P00864]
−
** [http://www.uniprot.org/uniprot/P37818 P37818]
+
** [http://www.uniprot.org/uniprot/P12880 P12880]
−
** [http://www.uniprot.org/uniprot/P49900 P49900]
+
** [http://www.uniprot.org/uniprot/P10490 P10490]
−
** [http://www.uniprot.org/uniprot/P39138 P39138]
+
** [http://www.uniprot.org/uniprot/P16097 P16097]
−
** [http://www.uniprot.org/uniprot/P53608 P53608]
+
** [http://www.uniprot.org/uniprot/P27154 P27154]
−
** [http://www.uniprot.org/uniprot/P72703 P72703]
+
** [http://www.uniprot.org/uniprot/P06516 P06516]
−
** [http://www.uniprot.org/uniprot/O68051 O68051]
+
** [http://www.uniprot.org/uniprot/Q43267 Q43267]
−
** [http://www.uniprot.org/uniprot/O49046 O49046]
+
** [http://www.uniprot.org/uniprot/Q41197 Q41197]
−
** [http://www.uniprot.org/uniprot/O76895 O76895]
+
** [http://www.uniprot.org/uniprot/P29194 P29194]
−
** [http://www.uniprot.org/uniprot/P33280 P33280]
+
** [http://www.uniprot.org/uniprot/P30694 P30694]
−
** [http://www.uniprot.org/uniprot/Q10066 Q10066]
+
** [http://www.uniprot.org/uniprot/P15804 P15804]
−
** [http://www.uniprot.org/uniprot/P00812 P00812]
+
** [http://www.uniprot.org/uniprot/Q43268 Q43268]
 +
** [http://www.uniprot.org/uniprot/Q01647 Q01647]
 +
** [http://www.uniprot.org/uniprot/Q01648 Q01648]
 +
** [http://www.uniprot.org/uniprot/Q02735 Q02735]
 +
** [http://www.uniprot.org/uniprot/Q02909 Q02909]
 +
** [http://www.uniprot.org/uniprot/Q42730 Q42730]
 +
** [http://www.uniprot.org/uniprot/Q41198 Q41198]
 +
** [http://www.uniprot.org/uniprot/P51063 P51063]
 +
** [http://www.uniprot.org/uniprot/Q40103 Q40103]
 +
** [http://www.uniprot.org/uniprot/Q40104 Q40104]
 +
** [http://www.uniprot.org/uniprot/Q40105 Q40105]
 +
** [http://www.uniprot.org/uniprot/Q40102 Q40102]
 +
** [http://www.uniprot.org/uniprot/Q41836 Q41836]
 +
** [http://www.uniprot.org/uniprot/O22118 O22118]
 +
** [http://www.uniprot.org/uniprot/O22119 O22119]
 +
** [http://www.uniprot.org/uniprot/O48623 O48623]
 +
** [http://www.uniprot.org/uniprot/Q42634 Q42634]
 +
** [http://www.uniprot.org/uniprot/O23946 O23946]
 +
** [http://www.uniprot.org/uniprot/O23947 O23947]
 +
** [http://www.uniprot.org/uniprot/Q84VW9 Q84VW9]
 
</div>
 
</div>
−
{{#set: direction=reversible}}
+
{{#set: direction=left-to-right}}
−
{{#set: common-name=arginase}}
+
{{#set: common-name=phosphoenolpyruvate carboxylase}}
−
{{#set: ec-number=ec-3.5.3.1}}
+
{{#set: ec-number=ec-4.1.1.31}}
−
{{#set: nb gene associated=2}}
+
{{#set: nb gene associated=1}}
−
{{#set: nb pathway associated=7}}
+
{{#set: nb pathway associated=12}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}

Revision as of 08:36, 15 March 2021

Reaction PEPCARBOX-RXN

  • direction:
    • left-to-right
  • common-name:
    • phosphoenolpyruvate carboxylase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-241, C4 photosynthetic carbon assimilation cycle, NADP-ME type:
    • 5 reactions found over 7 reactions in the full pathway
  • PWY-5913, partial TCA cycle (obligate autotrophs):
    • 10 reactions found over 8 reactions in the full pathway
  • PWY-6142, gluconeogenesis II (Methanobacterium thermoautotrophicum):
    • 10 reactions found over 13 reactions in the full pathway
  • P23-PWY, reductive TCA cycle I:
    • 9 reactions found over 12 reactions in the full pathway
  • PWYQT-4429, CO2 fixation into oxaloacetate (anaplerotic):
    • 2 reactions found over 2 reactions in the full pathway
  • PWY-6146, Methanobacterium thermoautotrophicum biosynthetic metabolism:
    • 9 reactions found over 2 reactions in the full pathway
  • FERMENTATION-PWY, mixed acid fermentation:
    • 11 reactions found over 16 reactions in the full pathway
  • PWY-7124, ethene biosynthesis V (engineered):
    • 8 reactions found over 8 reactions in the full pathway
  • PWY-6549, L-glutamine biosynthesis III:
    • 8 reactions found over 9 reactions in the full pathway
  • PWY-1622, formaldehyde assimilation I (serine pathway):
    • 6 reactions found over 13 reactions in the full pathway
  • PWY-7117, C4 photosynthetic carbon assimilation cycle, PEPCK type:
    • 10 reactions found over 14 reactions in the full pathway
  • PWY-7115, C4 photosynthetic carbon assimilation cycle, NAD-ME type:
    • 9 reactions found over 11 reactions in the full pathway

Reconstruction information

External links





Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=RXN-13709&oldid=128700"