Difference between revisions of "RXN-13724"

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(Created page with "Category:reaction == Reaction XMPXAN-RXN == * direction: ** left-to-right * common-name: ** xmp phosphohydrolase ** 5'-nucleotidase * ec-number: ** [http://enzyme.expasy.o...")
(Created page with "Category:reaction == Reaction 3.1.11.1-RXN == * direction: ** left-to-right * common-name: ** exodeoxyribonuclease i * ec-number: ** [http://enzyme.expasy.org/EC/3.1.11.1...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction XMPXAN-RXN ==
+
== Reaction 3.1.11.1-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** xmp phosphohydrolase
+
** exodeoxyribonuclease i
−
** 5'-nucleotidase
 
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/3.1.3.5 ec-3.1.3.5]
+
** [http://enzyme.expasy.org/EC/3.1.11.1 ec-3.1.11.1]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[WATER]][c] '''+''' 1 [[XANTHOSINE-5-PHOSPHATE]][c] '''=>''' 1 [[Pi]][c] '''+''' 1 [[XANTHOSINE]][c]
+
* 1 [[DNA-N]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[DNA-N]][c] '''+''' 1 [[Deoxy-Ribonucleoside-Monophosphates]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* Gene: [[SJ04180]]
−
* Gene: [[SJ16098]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ18895]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ15366]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ18402]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ09030]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
</div>
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-5695]], inosine 5'-phosphate degradation:
 
−
** '''4''' reactions found over '''4''' reactions in the full pathway
 
−
* [[PWY-6596]], adenosine nucleotides degradation I:
 
−
** '''7''' reactions found over '''8''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
* UNIPROT:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=28531 28531]
+
** [http://www.uniprot.org/uniprot/P45188 P45188]
−
* LIGAND-RXN:
+
** [http://www.uniprot.org/uniprot/P04995 P04995]
−
** [http://www.genome.jp/dbget-bin/www_bget?R02719 R02719]
+
** [http://www.uniprot.org/uniprot/P53695 P53695]
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=5'-nucleotidase|xmp phosphohydrolase}}
+
{{#set: common-name=exodeoxyribonuclease i}}
−
{{#set: ec-number=ec-3.1.3.5}}
+
{{#set: ec-number=ec-3.1.11.1}}
−
{{#set: nb gene associated=5}}
+
{{#set: nb gene associated=1}}
−
{{#set: nb pathway associated=2}}
+
{{#set: nb pathway associated=0}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction category=annotation}}
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
+
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=saccharina_japonica_genome}}

Revision as of 11:26, 15 January 2021

Reaction 3.1.11.1-RXN

  • direction:
    • left-to-right
  • common-name:
    • exodeoxyribonuclease i
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links





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