Difference between revisions of "RXN-13990"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=6PGLUCONDEHYDROG-RXN 6PGLUCONDEHYDROG-RXN] == * direction: ** left-to-right * common-name: ** phosp...")
(Created page with "Category:reaction == Reaction RXN-13990 == * direction: ** reversible * common-name: ** l-4-hydroxy-2-oxoglutarate aldolase * ec-number: ** [http://enzyme.expasy.org/EC/4....")
 
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=6PGLUCONDEHYDROG-RXN 6PGLUCONDEHYDROG-RXN] ==
+
== Reaction RXN-13990 ==
 
* direction:
 
* direction:
−
** left-to-right
+
** reversible
 
* common-name:
 
* common-name:
−
** phosphogluconate dehydrogenase [nad(p)+-dependent, decarboxylating]
+
** l-4-hydroxy-2-oxoglutarate aldolase
−
** phosphogluconate dehydrogenase (decarboxylating)
 
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/1.1.1.351 ec-1.1.1.351]
+
** [http://enzyme.expasy.org/EC/4.1.3.42 ec-4.1.3.42]
−
* synonymous:
 
−
** 6pgd
 
−
** 6-phosphogluconic dehydrogenase
 
−
** 6-phosphogluconic carboxylase
 
−
** phosphogluconic acid dehydrogenase
 
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[CPD-2961]][c] '''+''' 1 [[NAD-P-OR-NOP]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[NADH-P-OR-NOP]][c] '''+''' 1 [[RIBULOSE-5P]][c]
+
* 1 [[CPD-15016]][c] '''<=>''' 1 [[GLYOX]][c] '''+''' 1 [[PYRUVATE]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* Gene: [[SJ03464]]
−
* Gene: [[SJ16180]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ15062]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ11815]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ14331]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ07211]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ06127]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ11912]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ12698]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ22264]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ12699]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ00878]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
</div>
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[P122-PWY]], heterolactic fermentation: [http://metacyc.org/META/NEW-IMAGE?object=P122-PWY P122-PWY]
 
−
** '''16''' reactions found over '''18''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
−
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R10283 R10283]
 +
* METANETX-RXN : MNXR113640
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10117 10117]
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=35642 35642]
−
* UNIPROT:
+
{{#set: direction=reversible}}
−
** [http://www.uniprot.org/uniprot/P14332 P14332]
+
{{#set: common-name=l-4-hydroxy-2-oxoglutarate aldolase}}
−
** [http://www.uniprot.org/uniprot/P31072 P31072]
+
{{#set: ec-number=ec-4.1.3.42}}
−
** [http://www.uniprot.org/uniprot/Q9CDN4 Q9CDN4]
+
{{#set: nb gene associated=1}}
−
** [http://www.uniprot.org/uniprot/P47506 P47506]
+
{{#set: nb pathway associated=0}}
−
** [http://www.uniprot.org/uniprot/Q9JWS3 Q9JWS3]
+
{{#set: reconstruction category=orthology}}
−
** [http://www.uniprot.org/uniprot/P43774 P43774]
+
{{#set: reconstruction tool=pantograph}}
−
** [http://www.uniprot.org/uniprot/P12013 P12013]
 
−
** [http://www.uniprot.org/uniprot/P41576 P41576]
 
−
** [http://www.uniprot.org/uniprot/P00350 P00350]
 
−
** [http://www.uniprot.org/uniprot/P00349 P00349]
 
−
** [http://www.uniprot.org/uniprot/P52209 P52209]
 
−
** [http://www.uniprot.org/uniprot/P41581 P41581]
 
−
** [http://www.uniprot.org/uniprot/P41582 P41582]
 
−
** [http://www.uniprot.org/uniprot/Q59275 Q59275]
 
−
** [http://www.uniprot.org/uniprot/P41583 P41583]
 
−
** [http://www.uniprot.org/uniprot/Q60254 Q60254]
 
−
** [http://www.uniprot.org/uniprot/P37754 P37754]
 
−
** [http://www.uniprot.org/uniprot/Q59410 Q59410]
 
−
** [http://www.uniprot.org/uniprot/P52207 P52207]
 
−
** [http://www.uniprot.org/uniprot/P70718 P70718]
 
−
** [http://www.uniprot.org/uniprot/Q7M451 Q7M451]
 
−
** [http://www.uniprot.org/uniprot/P41572 P41572]
 
−
** [http://www.uniprot.org/uniprot/P14062 P14062]
 
−
** [http://www.uniprot.org/uniprot/P21577 P21577]
 
−
** [http://www.uniprot.org/uniprot/P38720 P38720]
 
−
** [http://www.uniprot.org/uniprot/Q40311 Q40311]
 
−
** [http://www.uniprot.org/uniprot/P53319 P53319]
 
−
** [http://www.uniprot.org/uniprot/O81237 O81237]
 
−
** [http://www.uniprot.org/uniprot/O81238 O81238]
 
−
** [http://www.uniprot.org/uniprot/O81239 O81239]
 
−
** [http://www.uniprot.org/uniprot/O22111 O22111]
 
−
** [http://www.uniprot.org/uniprot/Q17761 Q17761]
 
−
** [http://www.uniprot.org/uniprot/O32911 O32911]
 
−
</div>
 
−
{{#set: direction=left-to-right}}
 
−
{{#set: common-name=phosphogluconate dehydrogenase (decarboxylating)|phosphogluconate dehydrogenase [nad(p)+-dependent, decarboxylating]}}
 
−
{{#set: ec-number=ec-1.1.1.351}}
 
−
{{#set: synonymous=6-phosphogluconic dehydrogenase|6-phosphogluconic carboxylase|6pgd|phosphogluconic acid dehydrogenase}}
 
−
{{#set: nb gene associated=11}}
 
−
{{#set: nb pathway associated=1}}
 
−
{{#set: reconstruction category=annotation|orthology}}
 
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_arabidopsis_thaliana|output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome|output_pantograph_nannochloropsis_salina}}
+
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus}}

Latest revision as of 11:22, 18 March 2021

Reaction RXN-13990

  • direction:
    • reversible
  • common-name:
    • l-4-hydroxy-2-oxoglutarate aldolase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links

  • LIGAND-RXN:
  • METANETX-RXN : MNXR113640
  • RHEA:





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