Difference between revisions of "RXN-13990"

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(Created page with "Category:pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=LYSINE-AMINOAD-PWY LYSINE-AMINOAD-PWY] == * taxonomic-range: ** [http://metacyc.org/META/NEW-IMAGE?ob...")
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=6PGLUCONDEHYDROG-RXN 6PGLUCONDEHYDROG-RXN] == * direction: ** left-to-right * common-name: ** phosp...")
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[[Category:pathway]]
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[[Category:reaction]]
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=LYSINE-AMINOAD-PWY LYSINE-AMINOAD-PWY] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=6PGLUCONDEHYDROG-RXN 6PGLUCONDEHYDROG-RXN] ==
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* taxonomic-range:
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* direction:
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** [http://metacyc.org/META/NEW-IMAGE?object=tax-33682 tax-33682]
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** left-to-right
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** [http://metacyc.org/META/NEW-IMAGE?object=tax-4751 tax-4751]
 
 
* common-name:
 
* common-name:
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** l-lysine biosynthesis iv
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** phosphogluconate dehydrogenase [nad(p)+-dependent, decarboxylating]
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== Reaction(s) found ==
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** phosphogluconate dehydrogenase (decarboxylating)
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* [[HOMOACONITATE-HYDRATASE-RXN]]
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* ec-number:
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== Reaction(s) not found ==
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** [http://enzyme.expasy.org/EC/1.1.1.351 ec-1.1.1.351]
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* [http://metacyc.org/META/NEW-IMAGE?object=HOMOCITRATE-SYNTHASE-RXN HOMOCITRATE-SYNTHASE-RXN]
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* synonymous:
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* [http://metacyc.org/META/NEW-IMAGE?object=2-AMINOADIPATE-AMINOTRANSFERASE-RXN 2-AMINOADIPATE-AMINOTRANSFERASE-RXN]
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** 6pgd
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN3O-127 RXN3O-127]
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** 6-phosphogluconic dehydrogenase
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-16758 RXN-16758]
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** 6-phosphogluconic carboxylase
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* [http://metacyc.org/META/NEW-IMAGE?object=1.5.1.7-RXN 1.5.1.7-RXN]
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** phosphogluconic acid dehydrogenase
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN3O-1983 RXN3O-1983]
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== Reaction formula ==
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-16757 RXN-16757]
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* 1 [[CPD-2961]][c] '''+''' 1 [[NAD-P-OR-NOP]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[NADH-P-OR-NOP]][c] '''+''' 1 [[RIBULOSE-5P]][c]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-7970 RXN-7970]
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== Gene(s) associated with this reaction  ==
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{{#set: taxonomic-range=tax-33682|tax-4751}}
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<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
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{{#set: common-name=l-lysine biosynthesis iv}}
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* Gene: [[SJ16180]]
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{{#set: nb reaction found=1}}
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** Category: [[annotation]]
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{{#set: completion rate=0.11}}
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
{{#set: nb total reaction=9}}
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* Gene: [[SJ15062]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
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* Gene: [[SJ11815]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
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* Gene: [[SJ14331]]
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** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
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* Gene: [[SJ07211]]
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** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
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* Gene: [[SJ06127]]
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** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
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** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ11912]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
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** Category: [[orthology]]
 +
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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* Gene: [[SJ12698]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
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* Gene: [[SJ22264]]
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** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
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* Gene: [[SJ12699]]
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** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
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* Gene: [[SJ00878]]
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** Category: [[annotation]]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
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</div>
 +
== Pathway(s) ==
 +
* [[P122-PWY]], heterolactic fermentation: [http://metacyc.org/META/NEW-IMAGE?object=P122-PWY P122-PWY]
 +
** '''16''' reactions found over '''18''' reactions in the full pathway
 +
== Reconstruction information  ==
 +
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 +
== External links  ==
 +
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
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* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10117 10117]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/P14332 P14332]
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** [http://www.uniprot.org/uniprot/P31072 P31072]
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** [http://www.uniprot.org/uniprot/Q9CDN4 Q9CDN4]
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** [http://www.uniprot.org/uniprot/P47506 P47506]
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** [http://www.uniprot.org/uniprot/Q9JWS3 Q9JWS3]
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** [http://www.uniprot.org/uniprot/P43774 P43774]
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** [http://www.uniprot.org/uniprot/P12013 P12013]
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** [http://www.uniprot.org/uniprot/P41576 P41576]
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** [http://www.uniprot.org/uniprot/P00350 P00350]
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** [http://www.uniprot.org/uniprot/P00349 P00349]
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** [http://www.uniprot.org/uniprot/P52209 P52209]
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** [http://www.uniprot.org/uniprot/P41581 P41581]
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** [http://www.uniprot.org/uniprot/P41582 P41582]
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** [http://www.uniprot.org/uniprot/Q59275 Q59275]
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** [http://www.uniprot.org/uniprot/P41583 P41583]
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** [http://www.uniprot.org/uniprot/Q60254 Q60254]
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** [http://www.uniprot.org/uniprot/P37754 P37754]
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** [http://www.uniprot.org/uniprot/Q59410 Q59410]
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** [http://www.uniprot.org/uniprot/P52207 P52207]
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** [http://www.uniprot.org/uniprot/P70718 P70718]
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** [http://www.uniprot.org/uniprot/Q7M451 Q7M451]
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** [http://www.uniprot.org/uniprot/P41572 P41572]
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** [http://www.uniprot.org/uniprot/P14062 P14062]
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** [http://www.uniprot.org/uniprot/P21577 P21577]
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** [http://www.uniprot.org/uniprot/P38720 P38720]
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** [http://www.uniprot.org/uniprot/Q40311 Q40311]
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** [http://www.uniprot.org/uniprot/P53319 P53319]
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** [http://www.uniprot.org/uniprot/O81237 O81237]
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** [http://www.uniprot.org/uniprot/O81238 O81238]
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** [http://www.uniprot.org/uniprot/O81239 O81239]
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** [http://www.uniprot.org/uniprot/O22111 O22111]
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** [http://www.uniprot.org/uniprot/Q17761 Q17761]
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** [http://www.uniprot.org/uniprot/O32911 O32911]
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</div>
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{{#set: direction=left-to-right}}
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{{#set: common-name=phosphogluconate dehydrogenase (decarboxylating)|phosphogluconate dehydrogenase [nad(p)+-dependent, decarboxylating]}}
 +
{{#set: ec-number=ec-1.1.1.351}}
 +
{{#set: synonymous=6-phosphogluconic dehydrogenase|6-phosphogluconic carboxylase|6pgd|phosphogluconic acid dehydrogenase}}
 +
{{#set: nb gene associated=11}}
 +
{{#set: nb pathway associated=1}}
 +
{{#set: reconstruction category=annotation|orthology}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}
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{{#set: reconstruction comment=n.a}}
 +
{{#set: reconstruction source=output_pantograph_arabidopsis_thaliana|output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome|output_pantograph_nannochloropsis_salina}}

Revision as of 09:32, 27 August 2019

Reaction 6PGLUCONDEHYDROG-RXN

  • direction:
    • left-to-right
  • common-name:
    • phosphogluconate dehydrogenase [nad(p)+-dependent, decarboxylating]
    • phosphogluconate dehydrogenase (decarboxylating)
  • ec-number:
  • synonymous:
    • 6pgd
    • 6-phosphogluconic dehydrogenase
    • 6-phosphogluconic carboxylase
    • phosphogluconic acid dehydrogenase

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • P122-PWY, heterolactic fermentation: P122-PWY
    • 16 reactions found over 18 reactions in the full pathway

Reconstruction information

External links

Property "Common-name" (as page type) with input value "phosphogluconate dehydrogenase [nad(p)+-dependent, decarboxylating" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.





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