Difference between revisions of "RXN-14014"

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(Created page with "Category:reaction == Reaction HACD5 == * direction: ** reversible * common-name: ** (s)-3-hydroxydodecanoyl-coa:nad oxidoreductase == Reaction formula == * 1.0 CPD0-2107...")
(Created page with "Category:reaction == Reaction RXN-14014 == * direction: ** left-to-right * common-name: ** 4-hydroxy-tetrahydrodipicolinate reductase * ec-number: ** [http://enzyme.expasy...")
 
(3 intermediate revisions by the same user not shown)
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction HACD5 ==
+
== Reaction RXN-14014 ==
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
 
* common-name:
 
* common-name:
−
** (s)-3-hydroxydodecanoyl-coa:nad oxidoreductase
+
** 4-hydroxy-tetrahydrodipicolinate reductase
 +
* ec-number:
 +
** [http://enzyme.expasy.org/EC/1.17.1.8 ec-1.17.1.8]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1.0 [[CPD0-2107]][x] '''+''' 1.0 [[NAD]][x] '''<=>''' 1.0 [[CPD0-2105]][x] '''+''' 1.0 [[NADH]][x] '''+''' 1.0 [[PROTON]][x]
+
* 1 [[CPD-14443]][c] '''+''' 1 [[NADH-P-OR-NOP]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[DELTA1-PIPERIDEINE-2-6-DICARBOXYLATE]][c] '''+''' 1 [[NAD-P-OR-NOP]][c] '''+''' 1 [[WATER]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ03584]]
+
* Gene: [[SJ17695]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
+
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ21390]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 +
* [[PWY-2941]], L-lysine biosynthesis II:
 +
** '''6''' reactions found over '''9''' reactions in the full pathway
 +
* [[DAPLYSINESYN-PWY]], L-lysine biosynthesis I:
 +
** '''7''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-5097]], L-lysine biosynthesis VI:
 +
** '''7''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY-2942]], L-lysine biosynthesis III:
 +
** '''6''' reactions found over '''7''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
+
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
{{#set: direction=reversible}}
+
* METANETX-RXN : MNXR108728
−
{{#set: common-name=(s)-3-hydroxydodecanoyl-coa:nad oxidoreductase}}
+
* RHEA:
−
{{#set: nb gene associated=2}}
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=35333 35333]
−
{{#set: nb pathway associated=0}}
+
* LIGAND-RXN:
−
{{#set: reconstruction category=orthology}}
+
** [http://www.genome.jp/dbget-bin/www_bget?R04199 R04199]
−
{{#set: reconstruction tool=pantograph}}
+
{{#set: direction=left-to-right}}
 +
{{#set: common-name=4-hydroxy-tetrahydrodipicolinate reductase}}
 +
{{#set: ec-number=ec-1.17.1.8}}
 +
{{#set: nb gene associated=1}}
 +
{{#set: nb pathway associated=4}}
 +
{{#set: reconstruction category=orthology|annotation}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina}}
+
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}

Latest revision as of 11:21, 18 March 2021

Reaction RXN-14014

  • direction:
    • left-to-right
  • common-name:
    • 4-hydroxy-tetrahydrodipicolinate reductase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-2941, L-lysine biosynthesis II:
    • 6 reactions found over 9 reactions in the full pathway
  • DAPLYSINESYN-PWY, L-lysine biosynthesis I:
    • 7 reactions found over 9 reactions in the full pathway
  • PWY-5097, L-lysine biosynthesis VI:
    • 7 reactions found over 7 reactions in the full pathway
  • PWY-2942, L-lysine biosynthesis III:
    • 6 reactions found over 7 reactions in the full pathway

Reconstruction information

External links

  • METANETX-RXN : MNXR108728
  • RHEA:
  • LIGAND-RXN:





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