Difference between revisions of "RXN-14037"

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(Created page with "Category:reaction == Reaction UDP-GLUCURONATE-4-EPIMERASE-RXN == * direction: ** reversible * common-name: ** udp-glucuronate 4-epimerase * ec-number: ** [http://enzyme.ex...")
(Created page with "Category:reaction == Reaction RXN-14037 == * direction: ** reversible == Reaction formula == * 1 2-ACETO-LACTATE[c] '''+''' 1 THIAMINE-PYROPHOSPHATE[c] '''<=>''' 1...")
 
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[[Category:reaction]]
 
[[Category:reaction]]
== Reaction UDP-GLUCURONATE-4-EPIMERASE-RXN ==
+
== Reaction RXN-14037 ==
 
* direction:
 
* direction:
 
** reversible
 
** reversible
* common-name:
 
** udp-glucuronate 4-epimerase
 
* ec-number:
 
** [http://enzyme.expasy.org/EC/5.1.3.6 ec-5.1.3.6]
 
 
== Reaction formula ==
 
== Reaction formula ==
* 1 [[UDP-GLUCURONATE]][c] '''<=>''' 1 [[UDP-D-GALACTURONATE]][c]
+
* 1 [[2-ACETO-LACTATE]][c] '''+''' 1 [[THIAMINE-PYROPHOSPHATE]][c] '''<=>''' 1 [[2-ALPHA-HYDROXYETHYL-THPP]][c] '''+''' 1 [[PYRUVATE]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
* Gene: [[SJ01092]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
* Gene: [[SJ10400]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
* Gene: [[SJ19982]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
* Gene: [[SJ04385]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
</div>
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
* [[PWY-6415]], L-ascorbate biosynthesis V (euglena, D-galacturonate pathway):
 
** '''4''' reactions found over '''7''' reactions in the full pathway
 
* [[PWY-4861]], UDP-&alpha;-D-galacturonate biosynthesis I (from UDP-D-glucuronate):
 
** '''1''' reactions found over '''1''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
+
* category: [[gap-filling]]; source: [[gapfilling_solution_with_meneco_draft_medium]]; tool: [[meneco]]; comment: added for gapfilling
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
* METANETX-RXN : MNXR105084
+
* METANETX-RXN : MNXR95883
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R04672 R04672]
 
* RHEA:
 
* RHEA:
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=11407 11407]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=24808 24808]
* LIGAND-RXN:
 
** [http://www.genome.jp/dbget-bin/www_bget?R01385 R01385]
 
 
{{#set: direction=reversible}}
 
{{#set: direction=reversible}}
{{#set: common-name=udp-glucuronate 4-epimerase}}
+
{{#set: nb gene associated=0}}
{{#set: ec-number=ec-5.1.3.6}}
+
{{#set: nb pathway associated=0}}
{{#set: nb gene associated=4}}
+
{{#set: reconstruction category=gap-filling}}
{{#set: nb pathway associated=2}}
+
{{#set: reconstruction tool=meneco}}
{{#set: reconstruction category=orthology|annotation}}
+
{{#set: reconstruction comment=added for gapfilling}}
{{#set: reconstruction tool=pantograph|pathwaytools}}
+
{{#set: reconstruction source=gapfilling_solution_with_meneco_draft_medium}}
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|saccharina_japonica_genome}}
 

Latest revision as of 11:23, 18 March 2021

Reaction RXN-14037

  • direction:
    • reversible

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links

  • METANETX-RXN : MNXR95883
  • LIGAND-RXN:
  • RHEA: