Difference between revisions of "RXN-14187"

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(Created page with "Category:reaction == Reaction KDPGALDOL-RXN == * direction: ** left-to-right * ec-number: ** [http://enzyme.expasy.org/EC/4.1.2.55 ec-4.1.2.55] ** [http://enzyme.expasy.or...")
(Created page with "Category:reaction == Reaction RXN-14187 == * direction: ** left-to-right * common-name: ** nucleoside-diphosphatase * ec-number: ** [http://enzyme.expasy.org/EC/3.6.1.6 ec...")
 
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction KDPGALDOL-RXN ==
+
== Reaction RXN-14187 ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 +
* common-name:
 +
** nucleoside-diphosphatase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/4.1.2.55 ec-4.1.2.55]
+
** [http://enzyme.expasy.org/EC/3.6.1.6 ec-3.6.1.6]
−
** [http://enzyme.expasy.org/EC/4.1.2.14 ec-4.1.2.14]
 
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[2-KETO-3-DEOXY-6-P-GLUCONATE]][c] '''=>''' 1 [[GAP]][c] '''+''' 1 [[PYRUVATE]][c]
+
* 1 [[DCDP]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[DCMP]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[Pi]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ03464]]
+
* Gene: [[SJ00842]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ04502]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ16444]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-7310]], D-glucosaminate degradation:
+
* [[PWY-7210]], pyrimidine deoxyribonucleotides biosynthesis from CTP:
−
** '''1''' reactions found over '''3''' reactions in the full pathway
+
** '''8''' reactions found over '''8''' reactions in the full pathway
−
* [[PWY-2221]], Entner-Doudoroff pathway III (semi-phosphorylative):
 
−
** '''6''' reactions found over '''9''' reactions in the full pathway
 
−
* [[ENTNER-DOUDOROFF-PWY]], Entner-Doudoroff shunt:
 
−
** '''2''' reactions found over '''2''' reactions in the full pathway
 
−
* [[PWY-7562]], 3,6-anhydro-α-L-galactopyranose degradation:
 
−
** '''1''' reactions found over '''7''' reactions in the full pathway
 
−
* [[PWY-7242]], D-fructuronate degradation:
 
−
** '''1''' reactions found over '''4''' reactions in the full pathway
 
−
* [[GALACTUROCAT-PWY]], D-galacturonate degradation I:
 
−
** '''1''' reactions found over '''5''' reactions in the full pathway
 
−
* [[PWY-6507]], 4-deoxy-L-threo-hex-4-enopyranuronate degradation:
 
−
** '''1''' reactions found over '''5''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17090 17090]
 
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R05605 R05605]
+
** [http://www.genome.jp/dbget-bin/www_bget?R01667 R01667]
−
* UNIPROT:
+
* METANETX-RXN : MNXR101930
−
** [http://www.uniprot.org/uniprot/P44480 P44480]
 
−
** [http://www.uniprot.org/uniprot/P0A955 P0A955]
 
−
** [http://www.uniprot.org/uniprot/P00885 P00885]
 
−
** [http://www.uniprot.org/uniprot/Q9JR44 Q9JR44]
 
−
** [http://www.uniprot.org/uniprot/O25729 O25729]
 
−
** [http://www.uniprot.org/uniprot/Q9ZKB4 Q9ZKB4]
 
−
** [http://www.uniprot.org/uniprot/O83578 O83578]
 
−
** [http://www.uniprot.org/uniprot/Q9WXS1 Q9WXS1]
 
−
** [http://www.uniprot.org/uniprot/P50846 P50846]
 
−
** [http://www.uniprot.org/uniprot/P38448 P38448]
 
−
** [http://www.uniprot.org/uniprot/Q55872 Q55872]
 
−
** [http://www.uniprot.org/uniprot/P94802 P94802]
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: ec-number=ec-4.1.2.55|ec-4.1.2.14}}
+
{{#set: common-name=nucleoside-diphosphatase}}
−
{{#set: nb gene associated=1}}
+
{{#set: ec-number=ec-3.6.1.6}}
−
{{#set: nb pathway associated=7}}
+
{{#set: nb gene associated=3}}
−
{{#set: reconstruction category=orthology}}
+
{{#set: nb pathway associated=1}}
−
{{#set: reconstruction tool=pantograph}}
+
{{#set: reconstruction category=orthology|annotation}}
 +
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}

Latest revision as of 11:25, 18 March 2021

Reaction RXN-14187

  • direction:
    • left-to-right
  • common-name:
    • nucleoside-diphosphatase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-7210, pyrimidine deoxyribonucleotides biosynthesis from CTP:
    • 8 reactions found over 8 reactions in the full pathway

Reconstruction information

External links

  • LIGAND-RXN:
  • METANETX-RXN : MNXR101930





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