Difference between revisions of "RXN-14189"
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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-17473 RXN-17473] == * direction: ** left-to-right == Reaction formula == * 1 CPD-5662[c] ''...") |
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=PEPCARBOX-RXN PEPCARBOX-RXN] == * direction: ** left-to-right * common-name: ** phosphoenolpyruvate...") |
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[[Category:reaction]] | [[Category:reaction]] | ||
− | == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN- | + | == Reaction [http://metacyc.org/META/NEW-IMAGE?object=PEPCARBOX-RXN PEPCARBOX-RXN] == |
* direction: | * direction: | ||
** left-to-right | ** left-to-right | ||
+ | * common-name: | ||
+ | ** phosphoenolpyruvate carboxylase | ||
+ | * ec-number: | ||
+ | ** [http://enzyme.expasy.org/EC/4.1.1.31 ec-4.1.1.31] | ||
== Reaction formula == | == Reaction formula == | ||
− | * 1 [[ | + | * 1 [[HCO3]][c] '''+''' 1 [[PHOSPHO-ENOL-PYRUVATE]][c] '''=>''' 1 [[OXALACETIC_ACID]][c] '''+''' 1 [[Pi]][c] |
== Gene(s) associated with this reaction == | == Gene(s) associated with this reaction == | ||
− | * Gene: [[ | + | * Gene: [[SJ04004]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
Line 12: | Line 16: | ||
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
== Pathway(s) == | == Pathway(s) == | ||
+ | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> | ||
+ | * [[PWY-7124]], ethylene biosynthesis V (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7124 PWY-7124] | ||
+ | ** '''8''' reactions found over '''8''' reactions in the full pathway | ||
+ | * [[PWY-6549]], L-glutamine biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6549 PWY-6549] | ||
+ | ** '''8''' reactions found over '''9''' reactions in the full pathway | ||
+ | * [[PWY-1622]], formaldehyde assimilation I (serine pathway): [http://metacyc.org/META/NEW-IMAGE?object=PWY-1622 PWY-1622] | ||
+ | ** '''6''' reactions found over '''13''' reactions in the full pathway | ||
+ | * [[PWY-7117]], C4 photosynthetic carbon assimilation cycle, PEPCK type: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7117 PWY-7117] | ||
+ | ** '''10''' reactions found over '''12''' reactions in the full pathway | ||
+ | * [[PWY-7115]], C4 photosynthetic carbon assimilation cycle, NAD-ME type: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7115 PWY-7115] | ||
+ | ** '''9''' reactions found over '''10''' reactions in the full pathway | ||
+ | * [[PWY-241]], C4 photosynthetic carbon assimilation cycle, NADP-ME type: [http://metacyc.org/META/NEW-IMAGE?object=PWY-241 PWY-241] | ||
+ | ** '''5''' reactions found over '''6''' reactions in the full pathway | ||
+ | * [[PWY-5913]], partial TCA cycle (obligate autotrophs): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5913 PWY-5913] | ||
+ | ** '''10''' reactions found over '''11''' reactions in the full pathway | ||
+ | * [[PWY-6142]], gluconeogenesis II (Methanobacterium thermoautotrophicum): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6142 PWY-6142] | ||
+ | ** '''10''' reactions found over '''13''' reactions in the full pathway | ||
+ | * [[P23-PWY]], reductive TCA cycle I: [http://metacyc.org/META/NEW-IMAGE?object=P23-PWY P23-PWY] | ||
+ | ** '''9''' reactions found over '''12''' reactions in the full pathway | ||
+ | * [[PWYQT-4429]], CO2 fixation into oxaloacetate (anaplerotic): [http://metacyc.org/META/NEW-IMAGE?object=PWYQT-4429 PWYQT-4429] | ||
+ | ** '''2''' reactions found over '''2''' reactions in the full pathway | ||
+ | * [[PWY-6146]], Methanobacterium thermoautotrophicum biosynthetic metabolism: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6146 PWY-6146] | ||
+ | ** '''9''' reactions found over '''2''' reactions in the full pathway | ||
+ | * [[FERMENTATION-PWY]], mixed acid fermentation: [http://metacyc.org/META/NEW-IMAGE?object=FERMENTATION-PWY FERMENTATION-PWY] | ||
+ | ** '''11''' reactions found over '''16''' reactions in the full pathway | ||
+ | </div> | ||
== Reconstruction information == | == Reconstruction information == | ||
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | * category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
== External links == | == External links == | ||
+ | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> | ||
+ | * LIGAND-RXN: | ||
+ | ** [http://www.genome.jp/dbget-bin/www_bget?R00345 R00345] | ||
+ | * UNIPROT: | ||
+ | ** [http://www.uniprot.org/uniprot/P28594 P28594] | ||
+ | ** [http://www.uniprot.org/uniprot/P43920 P43920] | ||
+ | ** [http://www.uniprot.org/uniprot/P29195 P29195] | ||
+ | ** [http://www.uniprot.org/uniprot/P51059 P51059] | ||
+ | ** [http://www.uniprot.org/uniprot/P00864 P00864] | ||
+ | ** [http://www.uniprot.org/uniprot/P12880 P12880] | ||
+ | ** [http://www.uniprot.org/uniprot/P10490 P10490] | ||
+ | ** [http://www.uniprot.org/uniprot/P16097 P16097] | ||
+ | ** [http://www.uniprot.org/uniprot/P27154 P27154] | ||
+ | ** [http://www.uniprot.org/uniprot/P06516 P06516] | ||
+ | ** [http://www.uniprot.org/uniprot/Q43267 Q43267] | ||
+ | ** [http://www.uniprot.org/uniprot/Q41197 Q41197] | ||
+ | ** [http://www.uniprot.org/uniprot/P29194 P29194] | ||
+ | ** [http://www.uniprot.org/uniprot/P30694 P30694] | ||
+ | ** [http://www.uniprot.org/uniprot/P15804 P15804] | ||
+ | ** [http://www.uniprot.org/uniprot/Q43268 Q43268] | ||
+ | ** [http://www.uniprot.org/uniprot/Q01647 Q01647] | ||
+ | ** [http://www.uniprot.org/uniprot/Q01648 Q01648] | ||
+ | ** [http://www.uniprot.org/uniprot/Q02735 Q02735] | ||
+ | ** [http://www.uniprot.org/uniprot/Q02909 Q02909] | ||
+ | ** [http://www.uniprot.org/uniprot/Q42730 Q42730] | ||
+ | ** [http://www.uniprot.org/uniprot/Q41198 Q41198] | ||
+ | ** [http://www.uniprot.org/uniprot/P51063 P51063] | ||
+ | ** [http://www.uniprot.org/uniprot/Q40103 Q40103] | ||
+ | ** [http://www.uniprot.org/uniprot/Q40104 Q40104] | ||
+ | ** [http://www.uniprot.org/uniprot/Q40105 Q40105] | ||
+ | ** [http://www.uniprot.org/uniprot/Q40102 Q40102] | ||
+ | ** [http://www.uniprot.org/uniprot/Q41836 Q41836] | ||
+ | ** [http://www.uniprot.org/uniprot/O22118 O22118] | ||
+ | ** [http://www.uniprot.org/uniprot/O22119 O22119] | ||
+ | ** [http://www.uniprot.org/uniprot/O48623 O48623] | ||
+ | ** [http://www.uniprot.org/uniprot/Q42634 Q42634] | ||
+ | ** [http://www.uniprot.org/uniprot/O23946 O23946] | ||
+ | ** [http://www.uniprot.org/uniprot/O23947 O23947] | ||
+ | ** [http://www.uniprot.org/uniprot/Q84VW9 Q84VW9] | ||
+ | </div> | ||
{{#set: direction=left-to-right}} | {{#set: direction=left-to-right}} | ||
+ | {{#set: common-name=phosphoenolpyruvate carboxylase}} | ||
+ | {{#set: ec-number=ec-4.1.1.31}} | ||
{{#set: nb gene associated=1}} | {{#set: nb gene associated=1}} | ||
− | {{#set: nb pathway associated= | + | {{#set: nb pathway associated=12}} |
− | {{#set: reconstruction category=orthology | + | {{#set: reconstruction category=annotation|orthology}} |
{{#set: reconstruction tool=pantograph|pathwaytools}} | {{#set: reconstruction tool=pantograph|pathwaytools}} | ||
{{#set: reconstruction comment=n.a}} | {{#set: reconstruction comment=n.a}} | ||
− | {{#set: reconstruction source=saccharina_japonica_genome | + | {{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}} |
Revision as of 09:32, 27 August 2019
Contents
Reaction PEPCARBOX-RXN
- direction:
- left-to-right
- common-name:
- phosphoenolpyruvate carboxylase
- ec-number:
Reaction formula
- 1 HCO3[c] + 1 PHOSPHO-ENOL-PYRUVATE[c] => 1 OXALACETIC_ACID[c] + 1 Pi[c]
Gene(s) associated with this reaction
- Gene: SJ04004
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
Pathway(s)
- PWY-7124, ethylene biosynthesis V (engineered): PWY-7124
- 8 reactions found over 8 reactions in the full pathway
- PWY-6549, L-glutamine biosynthesis III: PWY-6549
- 8 reactions found over 9 reactions in the full pathway
- PWY-1622, formaldehyde assimilation I (serine pathway): PWY-1622
- 6 reactions found over 13 reactions in the full pathway
- PWY-7117, C4 photosynthetic carbon assimilation cycle, PEPCK type: PWY-7117
- 10 reactions found over 12 reactions in the full pathway
- PWY-7115, C4 photosynthetic carbon assimilation cycle, NAD-ME type: PWY-7115
- 9 reactions found over 10 reactions in the full pathway
- PWY-241, C4 photosynthetic carbon assimilation cycle, NADP-ME type: PWY-241
- 5 reactions found over 6 reactions in the full pathway
- PWY-5913, partial TCA cycle (obligate autotrophs): PWY-5913
- 10 reactions found over 11 reactions in the full pathway
- PWY-6142, gluconeogenesis II (Methanobacterium thermoautotrophicum): PWY-6142
- 10 reactions found over 13 reactions in the full pathway
- P23-PWY, reductive TCA cycle I: P23-PWY
- 9 reactions found over 12 reactions in the full pathway
- PWYQT-4429, CO2 fixation into oxaloacetate (anaplerotic): PWYQT-4429
- 2 reactions found over 2 reactions in the full pathway
- PWY-6146, Methanobacterium thermoautotrophicum biosynthetic metabolism: PWY-6146
- 9 reactions found over 2 reactions in the full pathway
- FERMENTATION-PWY, mixed acid fermentation: FERMENTATION-PWY
- 11 reactions found over 16 reactions in the full pathway
Reconstruction information
- category: annotation; source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- category: orthology; source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
External links