Difference between revisions of "RXN-14195"

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(Created page with "Category:reaction == Reaction PHOSPHOMEVALONATE-KINASE-RXN == * direction: ** reversible * common-name: ** phosphomevalonate kinase * ec-number: ** [http://enzyme.expasy.o...")
(Created page with "Category:reaction == Reaction TRNA-URACIL-5--METHYLTRANSFERASE-RXN == * direction: ** left-to-right * common-name: ** trna(m5u54)methyltransferase * ec-number: ** [http://...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction PHOSPHOMEVALONATE-KINASE-RXN ==
+
== Reaction TRNA-URACIL-5--METHYLTRANSFERASE-RXN ==
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
 
* common-name:
 
* common-name:
−
** phosphomevalonate kinase
+
** trna(m5u54)methyltransferase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.7.4.2 ec-2.7.4.2]
+
** [http://enzyme.expasy.org/EC/2.1.1.35 ec-2.1.1.35]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[ATP]][c] '''+''' 1 [[CPD-499]][c] '''<=>''' 1 [[ADP]][c] '''+''' 1 [[CPD-641]][c]
+
* 1 [[S-ADENOSYLMETHIONINE]][c] '''+''' 1 [[Uracil-54-in-tRNA]][c] '''=>''' 1 [[ADENOSYL-HOMO-CYS]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[tRNA-containing-5Me-uridine54]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ04742]]
+
* Gene: [[SJ03220]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-7391]], isoprene biosynthesis II (engineered):
 
−
** '''7''' reactions found over '''8''' reactions in the full pathway
 
−
* [[PWY-922]], mevalonate pathway I:
 
−
** '''7''' reactions found over '''7''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=16344 16344]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=42713 42713]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R03245 R03245]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00594 R00594]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P24521 P24521]
+
** [http://www.uniprot.org/uniprot/P23003 P23003]
−
{{#set: direction=reversible}}
+
** [http://www.uniprot.org/uniprot/P31812 P31812]
−
{{#set: common-name=phosphomevalonate kinase}}
+
** [http://www.uniprot.org/uniprot/Q9PP92 Q9PP92]
−
{{#set: ec-number=ec-2.7.4.2}}
+
** [http://www.uniprot.org/uniprot/Q9JT82 Q9JT82]
 +
{{#set: direction=left-to-right}}
 +
{{#set: common-name=trna(m5u54)methyltransferase}}
 +
{{#set: ec-number=ec-2.1.1.35}}
 
{{#set: nb gene associated=1}}
 
{{#set: nb gene associated=1}}
−
{{#set: nb pathway associated=2}}
+
{{#set: nb pathway associated=0}}
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}

Revision as of 19:02, 14 January 2021

Reaction TRNA-URACIL-5--METHYLTRANSFERASE-RXN

  • direction:
    • left-to-right
  • common-name:
    • trna(m5u54)methyltransferase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links





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