Difference between revisions of "RXN-14219"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GAMMA-GLUTAMYLTRANSFERASE-RXN GAMMA-GLUTAMYLTRANSFERASE-RXN] == * direction: ** left-to-right * com...")
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=PORPHOBILSYNTH-RXN PORPHOBILSYNTH-RXN] == * direction: ** left-to-right * common-name: ** porphobil...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=GAMMA-GLUTAMYLTRANSFERASE-RXN GAMMA-GLUTAMYLTRANSFERASE-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=PORPHOBILSYNTH-RXN PORPHOBILSYNTH-RXN] ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** γ-glutamyltranspeptidase
+
** porphobilinogen synthase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.3.2.2 ec-2.3.2.2]
+
** [http://enzyme.expasy.org/EC/4.2.1.24 ec-4.2.1.24]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[5-L-GLUTAMYL-PEPTIDE]][c] '''+''' 1 [[Amino-Acids]][c] '''=>''' 1 [[5-L-GLUTAMYL-AMINO-ACID]][c] '''+''' 1 [[Peptides-holder]][c]
+
* 2 [[5-AMINO-LEVULINATE]][c] '''=>''' 1 [[PORPHOBILINOGEN]][c] '''+''' 1 [[PROTON]][c] '''+''' 2 [[WATER]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ08598]]
+
* Gene: [[SJ07541]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ08599]]
+
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ07531]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 +
* [[PWY-5188]], tetrapyrrole biosynthesis I (from glutamate): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5188 PWY-5188]
 +
** '''6''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY-5189]], tetrapyrrole biosynthesis II (from glycine): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5189 PWY-5189]
 +
** '''3''' reactions found over '''4''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
 +
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=24064 24064]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R04159 R04159]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00036 R00036]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P07314 P07314]
+
** [http://www.uniprot.org/uniprot/P06214 P06214]
−
** [http://www.uniprot.org/uniprot/P36269 P36269]
+
** [http://www.uniprot.org/uniprot/P13716 P13716]
−
** [http://www.uniprot.org/uniprot/Q9BX51 Q9BX51]
+
** [http://www.uniprot.org/uniprot/Q7M315 Q7M315]
−
** [http://www.uniprot.org/uniprot/P18956 P18956]
+
** [http://www.uniprot.org/uniprot/P30124 P30124]
−
** [http://www.uniprot.org/uniprot/P54422 P54422]
+
** [http://www.uniprot.org/uniprot/Q9JV37 Q9JV37]
−
** [http://www.uniprot.org/uniprot/P63186 P63186]
+
** [http://www.uniprot.org/uniprot/P30950 P30950]
−
** [http://www.uniprot.org/uniprot/Q9JUL8 Q9JUL8]
+
** [http://www.uniprot.org/uniprot/Q60178 Q60178]
−
** [http://www.uniprot.org/uniprot/Q60928 Q60928]
+
** [http://www.uniprot.org/uniprot/Q9PNU5 Q9PNU5]
−
** [http://www.uniprot.org/uniprot/P20735 P20735]
+
** [http://www.uniprot.org/uniprot/Q59295 Q59295]
−
** [http://www.uniprot.org/uniprot/Q39078 Q39078]
+
** [http://www.uniprot.org/uniprot/Q02250 Q02250]
−
** [http://www.uniprot.org/uniprot/Q14390 Q14390]
+
** [http://www.uniprot.org/uniprot/P10518 P10518]
−
** [http://www.uniprot.org/uniprot/P74181 P74181]
+
** [http://www.uniprot.org/uniprot/Q43148 Q43148]
−
** [http://www.uniprot.org/uniprot/O65652 O65652]
+
** [http://www.uniprot.org/uniprot/Q42682 Q42682]
−
** [http://www.uniprot.org/uniprot/O65653 O65653]
+
** [http://www.uniprot.org/uniprot/Q43058 Q43058]
−
** [http://www.uniprot.org/uniprot/O14194 O14194]
+
** [http://www.uniprot.org/uniprot/Q59643 Q59643]
 +
** [http://www.uniprot.org/uniprot/Q9S8B1 Q9S8B1]
 +
** [http://www.uniprot.org/uniprot/P05373 P05373]
 +
** [http://www.uniprot.org/uniprot/P0ACB2 P0ACB2]
 +
** [http://www.uniprot.org/uniprot/Q42836 Q42836]
 +
** [http://www.uniprot.org/uniprot/P43210 P43210]
 +
** [http://www.uniprot.org/uniprot/Q9ZNC9 Q9ZNC9]
 +
</div>
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=&gamma;-glutamyltranspeptidase}}
+
{{#set: common-name=porphobilinogen synthase}}
−
{{#set: ec-number=ec-2.3.2.2}}
+
{{#set: ec-number=ec-4.2.1.24}}
 
{{#set: nb gene associated=2}}
 
{{#set: nb gene associated=2}}
−
{{#set: nb pathway associated=0}}
+
{{#set: nb pathway associated=2}}
−
{{#set: reconstruction category=orthology|annotation}}
+
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|output_pantograph_nannochloropsis_salina|saccharina_japonica_genome|output_pantograph_arabidopsis_thaliana}}

Revision as of 09:31, 27 August 2019

Reaction PORPHOBILSYNTH-RXN

  • direction:
    • left-to-right
  • common-name:
    • porphobilinogen synthase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-5188, tetrapyrrole biosynthesis I (from glutamate): PWY-5188
    • 6 reactions found over 6 reactions in the full pathway
  • PWY-5189, tetrapyrrole biosynthesis II (from glycine): PWY-5189
    • 3 reactions found over 4 reactions in the full pathway

Reconstruction information

External links





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