Difference between revisions of "RXN-14228"
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(Created page with "Category:reaction == Reaction ExchangeSeed-NA+ == * direction: ** reversible == Reaction formula == * 1.0 NA+[C-BOUNDARY] '''<=>''' 1.0 NA+[e] == Gene(s) associate...") |
(Created page with "Category:reaction == Reaction PNPOXI-RXN == * direction: ** left-to-right * common-name: ** pyridoxamine-phosphate oxidase ** pyridoxine 5'-phosphate oxidase * ec-number:...") |
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[[Category:reaction]] | [[Category:reaction]] | ||
− | == Reaction | + | == Reaction PNPOXI-RXN == |
* direction: | * direction: | ||
− | ** | + | ** left-to-right |
+ | * common-name: | ||
+ | ** pyridoxamine-phosphate oxidase | ||
+ | ** pyridoxine 5'-phosphate oxidase | ||
+ | * ec-number: | ||
+ | ** [http://enzyme.expasy.org/EC/1.4.3.5 ec-1.4.3.5] | ||
== Reaction formula == | == Reaction formula == | ||
− | * 1 | + | * 1 [[OXYGEN-MOLECULE]][c] '''+''' 1 [[PYRIDOXINE-5P]][c] '''=>''' 1 [[HYDROGEN-PEROXIDE]][c] '''+''' 1 [[PYRIDOXAL_PHOSPHATE]][c] |
== Gene(s) associated with this reaction == | == Gene(s) associated with this reaction == | ||
+ | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> | ||
+ | * Gene: [[SJ01932]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a | ||
+ | ** Category: [[orthology]] | ||
+ | *** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | * Gene: [[SJ08123]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
+ | ** Category: [[orthology]] | ||
+ | *** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | * Gene: [[SJ18666]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a | ||
+ | ** Category: [[orthology]] | ||
+ | *** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | * Gene: [[SJ21118]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a | ||
+ | ** Category: [[orthology]] | ||
+ | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | * Gene: [[SJ03655]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
+ | ** Category: [[orthology]] | ||
+ | *** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | </div> | ||
== Pathway(s) == | == Pathway(s) == | ||
+ | * [[PYRIDOXSYN-PWY]], pyridoxal 5'-phosphate biosynthesis I: | ||
+ | ** '''3''' reactions found over '''7''' reactions in the full pathway | ||
+ | * [[PLPSAL-PWY]], pyridoxal 5'-phosphate salvage I: | ||
+ | ** '''5''' reactions found over '''5''' reactions in the full pathway | ||
+ | * [[PWY-7204]], pyridoxal 5'-phosphate salvage II (plants): | ||
+ | ** '''9''' reactions found over '''9''' reactions in the full pathway | ||
+ | * [[PWY-7282]], 4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis: | ||
+ | ** '''6''' reactions found over '''10''' reactions in the full pathway | ||
== Reconstruction information == | == Reconstruction information == | ||
− | * category: [[ | + | * category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a |
+ | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | * category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
== External links == | == External links == | ||
− | {{#set: direction= | + | * RHEA: |
− | {{#set: nb gene associated= | + | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15150 15150] |
− | {{#set: nb pathway associated= | + | * LIGAND-RXN: |
− | {{#set: reconstruction category= | + | ** [http://www.genome.jp/dbget-bin/www_bget?R00278 R00278] |
− | {{#set: reconstruction tool= | + | {{#set: direction=left-to-right}} |
− | {{#set: reconstruction comment= | + | {{#set: common-name=pyridoxamine-phosphate oxidase|pyridoxine 5'-phosphate oxidase}} |
− | {{#set: reconstruction source= | + | {{#set: ec-number=ec-1.4.3.5}} |
+ | {{#set: nb gene associated=5}} | ||
+ | {{#set: nb pathway associated=4}} | ||
+ | {{#set: reconstruction category=annotation|orthology}} | ||
+ | {{#set: reconstruction tool=pathwaytools|pantograph}} | ||
+ | {{#set: reconstruction comment=n.a}} | ||
+ | {{#set: reconstruction source=output_pantograph_nannochloropsis_salina|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}} |
Revision as of 13:15, 14 January 2021
Contents
Reaction PNPOXI-RXN
- direction:
- left-to-right
- common-name:
- pyridoxamine-phosphate oxidase
- pyridoxine 5'-phosphate oxidase
- ec-number:
Reaction formula
- 1 OXYGEN-MOLECULE[c] + 1 PYRIDOXINE-5P[c] => 1 HYDROGEN-PEROXIDE[c] + 1 PYRIDOXAL_PHOSPHATE[c]
Gene(s) associated with this reaction
- Gene: SJ01932
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: orthology
- Source: output_pantograph_nannochloropsis_salina, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
- Gene: SJ08123
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_nannochloropsis_salina, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
- Gene: SJ18666
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: orthology
- Source: output_pantograph_nannochloropsis_salina, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
- Gene: SJ21118
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: orthology
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
- Gene: SJ03655
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_nannochloropsis_salina, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
Pathway(s)
- PYRIDOXSYN-PWY, pyridoxal 5'-phosphate biosynthesis I:
- 3 reactions found over 7 reactions in the full pathway
- PLPSAL-PWY, pyridoxal 5'-phosphate salvage I:
- 5 reactions found over 5 reactions in the full pathway
- PWY-7204, pyridoxal 5'-phosphate salvage II (plants):
- 9 reactions found over 9 reactions in the full pathway
- PWY-7282, 4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis:
- 6 reactions found over 10 reactions in the full pathway
Reconstruction information
- category: orthology; source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
- category: annotation; source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- category: orthology; source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
External links