Difference between revisions of "RXN-14246"

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(Created page with "Category:reaction == Reaction D-PPENTOMUT-RXN == * direction: ** reversible * common-name: ** d-deoxyribose 1,5-phosphomutase ** deoxyribose 1,5-phosphomutase * ec-number:...")
(Created page with "Category:reaction == Reaction RXN-14246 == * direction: ** reversible == Reaction formula == * 1 MESO-DIAMINOPIMELATE[c] '''+''' 1 NADP[c] '''<=>''' 1 AMMONIUM...")
 
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[[Category:reaction]]
 
[[Category:reaction]]
== Reaction D-PPENTOMUT-RXN ==
+
== Reaction RXN-14246 ==
 
* direction:
 
* direction:
 
** reversible
 
** reversible
* common-name:
 
** d-deoxyribose 1,5-phosphomutase
 
** deoxyribose 1,5-phosphomutase
 
* ec-number:
 
** [http://enzyme.expasy.org/EC/5.4.2.7 ec-5.4.2.7]
 
 
== Reaction formula ==
 
== Reaction formula ==
* 1 [[DEOXY-D-RIBOSE-1-PHOSPHATE]][c] '''<=>''' 1 [[DEOXY-RIBOSE-5P]][c]
+
* 1 [[MESO-DIAMINOPIMELATE]][c] '''+''' 1 [[NADP]][c] '''<=>''' 1 [[AMMONIUM]][c] '''+''' 1 [[DELTA1-PIPERIDEINE-2-6-DICARBOXYLATE]][c] '''+''' 1 [[NADPH]][c] '''+''' 2 [[PROTON]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
* Gene: [[SJ05004]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
* [[PWY-7180]], 2-deoxy-&alpha;-D-ribose 1-phosphate degradation:
 
** '''1''' reactions found over '''3''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
+
* category: [[gap-filling]]; source: [[gapfilling_solution_with_meneco_draft_medium]]; tool: [[meneco]]; comment: added for gapfilling
 
== External links  ==
 
== External links  ==
 +
* METANETX-RXN : MNXR97142
 
* RHEA:
 
* RHEA:
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=27661 27661]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=32257 32257]
* LIGAND-RXN:
 
** [http://www.genome.jp/dbget-bin/www_bget?R02749 R02749]
 
* UNIPROT:
 
** [http://www.uniprot.org/uniprot/Q9CH12 Q9CH12]
 
** [http://www.uniprot.org/uniprot/O24821 O24821]
 
** [http://www.uniprot.org/uniprot/P0A6K6 P0A6K6]
 
 
{{#set: direction=reversible}}
 
{{#set: direction=reversible}}
{{#set: common-name=deoxyribose 1,5-phosphomutase|d-deoxyribose 1,5-phosphomutase}}
+
{{#set: nb gene associated=0}}
{{#set: ec-number=ec-5.4.2.7}}
+
{{#set: nb pathway associated=0}}
{{#set: nb gene associated=1}}
+
{{#set: reconstruction category=gap-filling}}
{{#set: nb pathway associated=1}}
+
{{#set: reconstruction tool=meneco}}
{{#set: reconstruction category=annotation}}
+
{{#set: reconstruction comment=added for gapfilling}}
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: reconstruction source=gapfilling_solution_with_meneco_draft_medium}}
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction source=saccharina_japonica_genome}}
 

Latest revision as of 11:23, 18 March 2021

Reaction RXN-14246

  • direction:
    • reversible

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links

  • METANETX-RXN : MNXR97142
  • RHEA: