Difference between revisions of "RXN-14264"

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(Created page with "Category:reaction == Reaction METHYLACYLYLCOA-HYDROXY-RXN == * direction: ** reversible * common-name: ** methylacrylyl-coa hydratase ** 3-hydroxy-isobutyryl-coa hydro-lya...")
(Created page with "Category:reaction == Reaction GSAAMINOTRANS-RXN == * direction: ** left-to-right * common-name: ** glutamate-1-semialdehyde aminotransferase * ec-number: ** [http://enzyme...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction METHYLACYLYLCOA-HYDROXY-RXN ==
+
== Reaction GSAAMINOTRANS-RXN ==
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
 
* common-name:
 
* common-name:
−
** methylacrylyl-coa hydratase
+
** glutamate-1-semialdehyde aminotransferase
−
** 3-hydroxy-isobutyryl-coa hydro-lyase
 
−
** enoyl-coa hydratase
 
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/4.2.1.17 ec-4.2.1.17]
+
** [http://enzyme.expasy.org/EC/5.4.3.8 ec-5.4.3.8]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[CPD-12173]][c] '''<=>''' 1 [[METHACRYLYL-COA]][c] '''+''' 1 [[WATER]][c]
+
* 1 [[GLUTAMATE-1-SEMIALDEHYDE]][c] '''=>''' 1 [[5-AMINO-LEVULINATE]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* Gene: [[SJ13978]]
−
* Gene: [[SJ03913]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ07211]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ21390]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ03584]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ10275]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ14591]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
</div>
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[VALDEG-PWY]], L-valine degradation I:
+
* [[PWY-5188]], tetrapyrrole biosynthesis I (from glutamate):
−
** '''6''' reactions found over '''8''' reactions in the full pathway
+
** '''6''' reactions found over '''6''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=31178 31178]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=14265 14265]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R04224 R04224]
+
** [http://www.genome.jp/dbget-bin/www_bget?R02272 R02272]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P21177 P21177]
+
** [http://www.uniprot.org/uniprot/P18492 P18492]
−
** [http://www.uniprot.org/uniprot/Q08426 Q08426]
+
** [http://www.uniprot.org/uniprot/P21267 P21267]
−
** [http://www.uniprot.org/uniprot/O29814 O29814]
+
** [http://www.uniprot.org/uniprot/Q06741 Q06741]
−
** [http://www.uniprot.org/uniprot/O29299 O29299]
+
** [http://www.uniprot.org/uniprot/Q06774 Q06774]
−
** [http://www.uniprot.org/uniprot/O34893 O34893]
+
** [http://www.uniprot.org/uniprot/P23893 P23893]
−
** [http://www.uniprot.org/uniprot/O23520 O23520]
+
** [http://www.uniprot.org/uniprot/O26330 O26330]
−
** [http://www.uniprot.org/uniprot/P76082 P76082]
+
** [http://www.uniprot.org/uniprot/P30949 P30949]
−
** [http://www.uniprot.org/uniprot/P64016 P64016]
+
** [http://www.uniprot.org/uniprot/Q9PP70 Q9PP70]
−
** [http://www.uniprot.org/uniprot/P07896 P07896]
+
** [http://www.uniprot.org/uniprot/Q9JW10 Q9JW10]
−
** [http://www.uniprot.org/uniprot/O53419 O53419]
+
** [http://www.uniprot.org/uniprot/O29027 O29027]
−
** [http://www.uniprot.org/uniprot/P94549 P94549]
+
** [http://www.uniprot.org/uniprot/P45621 P45621]
−
** [http://www.uniprot.org/uniprot/Q13825 Q13825]
+
** [http://www.uniprot.org/uniprot/P24630 P24630]
−
** [http://www.uniprot.org/uniprot/P45361 P45361]
+
** [http://www.uniprot.org/uniprot/P31593 P31593]
−
** [http://www.uniprot.org/uniprot/P28793 P28793]
+
** [http://www.uniprot.org/uniprot/Q39566 Q39566]
−
** [http://www.uniprot.org/uniprot/P14604 P14604]
+
** [http://www.uniprot.org/uniprot/P48247 P48247]
−
** [http://www.uniprot.org/uniprot/P22414 P22414]
+
** [http://www.uniprot.org/uniprot/P46716 P46716]
−
** [http://www.uniprot.org/uniprot/Q7M0E0 Q7M0E0]
+
** [http://www.uniprot.org/uniprot/Q40147 Q40147]
−
** [http://www.uniprot.org/uniprot/P34559 P34559]
+
** [http://www.uniprot.org/uniprot/O74061 O74061]
−
** [http://www.uniprot.org/uniprot/Q01373 Q01373]
 
−
** [http://www.uniprot.org/uniprot/P55100 P55100]
 
−
** [http://www.uniprot.org/uniprot/P53526 P53526]
 
−
** [http://www.uniprot.org/uniprot/Q39659 Q39659]
 
−
** [http://www.uniprot.org/uniprot/O52797 O52797]
 
 
</div>
 
</div>
−
{{#set: direction=reversible}}
+
{{#set: direction=left-to-right}}
−
{{#set: common-name=methylacrylyl-coa hydratase|3-hydroxy-isobutyryl-coa hydro-lyase|enoyl-coa hydratase}}
+
{{#set: common-name=glutamate-1-semialdehyde aminotransferase}}
−
{{#set: ec-number=ec-4.2.1.17}}
+
{{#set: ec-number=ec-5.4.3.8}}
−
{{#set: nb gene associated=6}}
+
{{#set: nb gene associated=1}}
 
{{#set: nb pathway associated=1}}
 
{{#set: nb pathway associated=1}}
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}

Revision as of 19:05, 14 January 2021

Reaction GSAAMINOTRANS-RXN

  • direction:
    • left-to-right
  • common-name:
    • glutamate-1-semialdehyde aminotransferase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-5188, tetrapyrrole biosynthesis I (from glutamate):
    • 6 reactions found over 6 reactions in the full pathway

Reconstruction information

External links





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