Difference between revisions of "RXN-14264"

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(Created page with "Category:reaction == Reaction METHYLACYLYLCOA-HYDROXY-RXN == * direction: ** reversible * common-name: ** methylacrylyl-coa hydratase ** 3-hydroxy-isobutyryl-coa hydro-lya...")
(Created page with "Category:reaction == Reaction RXN-14264 == * direction: ** reversible * ec-number: ** [http://enzyme.expasy.org/EC/1.3.8.4 ec-1.3.8.4] == Reaction formula == * 1 FAD[c...")
 
(3 intermediate revisions by 3 users not shown)
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction METHYLACYLYLCOA-HYDROXY-RXN ==
+
== Reaction RXN-14264 ==
 
* direction:
 
* direction:
 
** reversible
 
** reversible
−
* common-name:
 
−
** methylacrylyl-coa hydratase
 
−
** 3-hydroxy-isobutyryl-coa hydro-lyase
 
−
** enoyl-coa hydratase
 
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/4.2.1.17 ec-4.2.1.17]
+
** [http://enzyme.expasy.org/EC/1.3.8.4 ec-1.3.8.4]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[CPD-12173]][c] '''<=>''' 1 [[METHACRYLYL-COA]][c] '''+''' 1 [[WATER]][c]
+
* 1 [[FAD]][c] '''+''' 1 [[ISOVALERYL-COA]][c] '''+''' 1 [[PROTON]][c] '''<=>''' 1 [[3-METHYL-CROTONYL-COA]][c] '''+''' 1 [[FADH2]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* Gene: [[SJ15262]]
−
* Gene: [[SJ03913]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ07211]]
+
* Gene: [[SJ07241]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
Line 25: Line 18:
 
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ21390]]
+
* Gene: [[SJ19669]]
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ03584]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ10275]]
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ14591]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
</div>
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[VALDEG-PWY]], L-valine degradation I:
 
−
** '''6''' reactions found over '''8''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=31178 31178]
 
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R04224 R04224]
 
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/P21177 P21177]
 
−
** [http://www.uniprot.org/uniprot/Q08426 Q08426]
 
−
** [http://www.uniprot.org/uniprot/O29814 O29814]
 
−
** [http://www.uniprot.org/uniprot/O29299 O29299]
 
−
** [http://www.uniprot.org/uniprot/O34893 O34893]
 
−
** [http://www.uniprot.org/uniprot/O23520 O23520]
 
−
** [http://www.uniprot.org/uniprot/P76082 P76082]
 
−
** [http://www.uniprot.org/uniprot/P64016 P64016]
 
−
** [http://www.uniprot.org/uniprot/P07896 P07896]
 
−
** [http://www.uniprot.org/uniprot/O53419 O53419]
 
−
** [http://www.uniprot.org/uniprot/P94549 P94549]
 
−
** [http://www.uniprot.org/uniprot/Q13825 Q13825]
 
−
** [http://www.uniprot.org/uniprot/P45361 P45361]
 
−
** [http://www.uniprot.org/uniprot/P28793 P28793]
 
−
** [http://www.uniprot.org/uniprot/P14604 P14604]
 
−
** [http://www.uniprot.org/uniprot/P22414 P22414]
 
−
** [http://www.uniprot.org/uniprot/Q7M0E0 Q7M0E0]
 
−
** [http://www.uniprot.org/uniprot/P34559 P34559]
 
−
** [http://www.uniprot.org/uniprot/Q01373 Q01373]
 
−
** [http://www.uniprot.org/uniprot/P55100 P55100]
 
−
** [http://www.uniprot.org/uniprot/P53526 P53526]
 
−
** [http://www.uniprot.org/uniprot/Q39659 Q39659]
 
−
** [http://www.uniprot.org/uniprot/O52797 O52797]
 
−
</div>
 
 
{{#set: direction=reversible}}
 
{{#set: direction=reversible}}
−
{{#set: common-name=methylacrylyl-coa hydratase|3-hydroxy-isobutyryl-coa hydro-lyase|enoyl-coa hydratase}}
+
{{#set: ec-number=ec-1.3.8.4}}
−
{{#set: ec-number=ec-4.2.1.17}}
+
{{#set: nb gene associated=3}}
−
{{#set: nb gene associated=6}}
+
{{#set: nb pathway associated=0}}
−
{{#set: nb pathway associated=1}}
+
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome}}

Latest revision as of 11:23, 18 March 2021

Reaction RXN-14264

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links

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