Difference between revisions of "RXN-14268"
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(Created page with "Category:reaction == Reaction RXN-9662 == * direction: ** left-to-right * common-name: ** trans tetradec-2-enoyl-[acp] reductase ** myristoyl-[acyl-carrier-protein] reduct...") |
(Created page with "Category:reaction == Reaction GTP-CYCLOHYDRO-I-RXN == * direction: ** left-to-right * common-name: ** gtp cyclohydrolase * ec-number: ** [http://enzyme.expasy.org/EC/3.5.4...") |
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Line 1: | Line 1: | ||
[[Category:reaction]] | [[Category:reaction]] | ||
− | == Reaction RXN | + | == Reaction GTP-CYCLOHYDRO-I-RXN == |
* direction: | * direction: | ||
** left-to-right | ** left-to-right | ||
* common-name: | * common-name: | ||
− | ** | + | ** gtp cyclohydrolase |
− | |||
* ec-number: | * ec-number: | ||
− | ** [http://enzyme.expasy.org/EC/ | + | ** [http://enzyme.expasy.org/EC/3.5.4.16 ec-3.5.4.16] |
== Reaction formula == | == Reaction formula == | ||
− | * 1 [[ | + | * 1 [[GTP]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[DIHYDRONEOPTERIN-P3]][c] '''+''' 1 [[FORMATE]][c] '''+''' 1 [[PROTON]][c] |
== Gene(s) associated with this reaction == | == Gene(s) associated with this reaction == | ||
− | * Gene: [[ | + | * Gene: [[SJ00877]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
** Category: [[orthology]] | ** Category: [[orthology]] | ||
+ | *** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
− | |||
− | |||
− | |||
== Pathway(s) == | == Pathway(s) == | ||
− | * [[PWY- | + | * [[PWY0-1433]], tetrahydromonapterin biosynthesis: |
− | ** ''' | + | ** '''1''' reactions found over '''4''' reactions in the full pathway |
+ | * [[PWY-7442]], drosopterin and aurodrosopterin biosynthesis: | ||
+ | ** '''3''' reactions found over '''7''' reactions in the full pathway | ||
+ | * [[PWY-6703]], preQ0 biosynthesis: | ||
+ | ** '''1''' reactions found over '''4''' reactions in the full pathway | ||
+ | * [[PWY-7852]], 6-hydroxymethyl-dihydropterin diphosphate biosynthesis IV (Plasmodium): | ||
+ | ** '''2''' reactions found over '''3''' reactions in the full pathway | ||
+ | * [[PWY-6147]], 6-hydroxymethyl-dihydropterin diphosphate biosynthesis I: | ||
+ | ** '''5''' reactions found over '''5''' reactions in the full pathway | ||
+ | * [[PWY-5664]]: | ||
+ | ** '''2''' reactions found over '''n.a''' reactions in the full pathway | ||
+ | * [[PWY-6983]], threo-tetrahydrobiopterin biosynthesis: | ||
+ | ** '''2''' reactions found over '''4''' reactions in the full pathway | ||
+ | * [[PWY-5663]], erythro-tetrahydrobiopterin biosynthesis I: | ||
+ | ** '''3''' reactions found over '''4''' reactions in the full pathway | ||
== Reconstruction information == | == Reconstruction information == | ||
+ | * category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a | ||
+ | * category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
− | |||
== External links == | == External links == | ||
+ | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> | ||
+ | * METANETX-RXN : MNXR100453 | ||
+ | * RHEA: | ||
+ | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17473 17473] | ||
+ | * LIGAND-RXN: | ||
+ | ** [http://www.genome.jp/dbget-bin/www_bget?R00424 R00424] | ||
+ | * UNIPROT: | ||
+ | ** [http://www.uniprot.org/uniprot/P19465 P19465] | ||
+ | ** [http://www.uniprot.org/uniprot/P22288 P22288] | ||
+ | ** [http://www.uniprot.org/uniprot/P43866 P43866] | ||
+ | ** [http://www.uniprot.org/uniprot/P51594 P51594] | ||
+ | ** [http://www.uniprot.org/uniprot/P64207 P64207] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9CGE3 Q9CGE3] | ||
+ | ** [http://www.uniprot.org/uniprot/O66603 O66603] | ||
+ | ** [http://www.uniprot.org/uniprot/P56462 P56462] | ||
+ | ** [http://www.uniprot.org/uniprot/P0A6T5 P0A6T5] | ||
+ | ** [http://www.uniprot.org/uniprot/P50141 P50141] | ||
+ | ** [http://www.uniprot.org/uniprot/P30793 P30793] | ||
+ | ** [http://www.uniprot.org/uniprot/P51601 P51601] | ||
+ | ** [http://www.uniprot.org/uniprot/Q05915 Q05915] | ||
+ | ** [http://www.uniprot.org/uniprot/P51597 P51597] | ||
+ | ** [http://www.uniprot.org/uniprot/P51600 P51600] | ||
+ | ** [http://www.uniprot.org/uniprot/Q94465 Q94465] | ||
+ | ** [http://www.uniprot.org/uniprot/Q55759 Q55759] | ||
+ | </div> | ||
{{#set: direction=left-to-right}} | {{#set: direction=left-to-right}} | ||
− | {{#set: common-name= | + | {{#set: common-name=gtp cyclohydrolase}} |
− | {{#set: ec-number=ec- | + | {{#set: ec-number=ec-3.5.4.16}} |
− | {{#set: nb gene associated= | + | {{#set: nb gene associated=1}} |
− | {{#set: nb pathway associated= | + | {{#set: nb pathway associated=8}} |
− | {{#set: reconstruction category=annotation | + | {{#set: reconstruction category=orthology|annotation}} |
− | {{#set: reconstruction tool=pathwaytools | + | {{#set: reconstruction tool=pantograph|pathwaytools}} |
{{#set: reconstruction comment=n.a}} | {{#set: reconstruction comment=n.a}} | ||
− | {{#set: reconstruction source=saccharina_japonica_genome | + | {{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|output_pantograph_nannochloropsis_salina|saccharina_japonica_genome}} |
Revision as of 08:37, 15 March 2021
Contents
Reaction GTP-CYCLOHYDRO-I-RXN
- direction:
- left-to-right
- common-name:
- gtp cyclohydrolase
- ec-number:
Reaction formula
- 1 GTP[c] + 1 WATER[c] => 1 DIHYDRONEOPTERIN-P3[c] + 1 FORMATE[c] + 1 PROTON[c]
Gene(s) associated with this reaction
- Gene: SJ00877
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_nannochloropsis_salina, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
Pathway(s)
- PWY0-1433, tetrahydromonapterin biosynthesis:
- 1 reactions found over 4 reactions in the full pathway
- PWY-7442, drosopterin and aurodrosopterin biosynthesis:
- 3 reactions found over 7 reactions in the full pathway
- PWY-6703, preQ0 biosynthesis:
- 1 reactions found over 4 reactions in the full pathway
- PWY-7852, 6-hydroxymethyl-dihydropterin diphosphate biosynthesis IV (Plasmodium):
- 2 reactions found over 3 reactions in the full pathway
- PWY-6147, 6-hydroxymethyl-dihydropterin diphosphate biosynthesis I:
- 5 reactions found over 5 reactions in the full pathway
- PWY-5664:
- 2 reactions found over n.a reactions in the full pathway
- PWY-6983, threo-tetrahydrobiopterin biosynthesis:
- 2 reactions found over 4 reactions in the full pathway
- PWY-5663, erythro-tetrahydrobiopterin biosynthesis I:
- 3 reactions found over 4 reactions in the full pathway
Reconstruction information
- category: orthology; source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
- category: orthology; source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- category: annotation; source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
External links