Difference between revisions of "RXN-14276"

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(Created page with "Category:reaction == Reaction 6PGLUCONOLACT-RXN == * direction: ** left-to-right * common-name: ** 6-phosphogluconolactonase * ec-number: ** [http://enzyme.expasy.org/EC/3...")
(Created page with "Category:reaction == Reaction UROGENIIISYN-RXN == * direction: ** left-to-right * common-name: ** uroporphyrinogen iii synthase * ec-number: ** [http://enzyme.expasy.org/E...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction 6PGLUCONOLACT-RXN ==
+
== Reaction UROGENIIISYN-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** 6-phosphogluconolactonase
+
** uroporphyrinogen iii synthase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/3.1.1.31 ec-3.1.1.31]
+
** [http://enzyme.expasy.org/EC/4.2.1.75 ec-4.2.1.75]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[D-6-P-GLUCONO-DELTA-LACTONE]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[CPD-2961]][c] '''+''' 1 [[PROTON]][c]
+
* 1 [[HYDROXYMETHYLBILANE]][c] '''=>''' 1 [[UROPORPHYRINOGEN-III]][c] '''+''' 1 [[WATER]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ07027]]
+
* Gene: [[SJ19532]]
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ10585]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[GLYCOLYSIS-E-D]], superpathway of glycolysis and the Entner-Doudoroff pathway:
+
* [[PWY-5189]], tetrapyrrole biosynthesis II (from glycine):
−
** '''4''' reactions found over '''2''' reactions in the full pathway
+
** '''3''' reactions found over '''4''' reactions in the full pathway
−
* [[OXIDATIVEPENT-PWY]], pentose phosphate pathway (oxidative branch) I:
+
* [[PWY-5188]], tetrapyrrole biosynthesis I (from glutamate):
−
** '''3''' reactions found over '''3''' reactions in the full pathway
+
** '''6''' reactions found over '''6''' reactions in the full pathway
−
* [[RUMP-PWY]], formaldehyde oxidation I:
 
−
** '''4''' reactions found over '''6''' reactions in the full pathway
 
−
* [[P122-PWY]], heterolactic fermentation:
 
−
** '''16''' reactions found over '''18''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
+
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12557 12557]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=18965 18965]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R02035 R02035]
+
** [http://www.genome.jp/dbget-bin/www_bget?R03165 R03165]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P63337 P63337]
+
** [http://www.uniprot.org/uniprot/P10746 P10746]
 +
** [http://www.uniprot.org/uniprot/P51163 P51163]
 +
** [http://www.uniprot.org/uniprot/P21248 P21248]
 +
** [http://www.uniprot.org/uniprot/Q58401 Q58401]
 +
** [http://www.uniprot.org/uniprot/P09126 P09126]
 +
** [http://www.uniprot.org/uniprot/Q59294 Q59294]
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=6-phosphogluconolactonase}}
+
{{#set: common-name=uroporphyrinogen iii synthase}}
−
{{#set: ec-number=ec-3.1.1.31}}
+
{{#set: ec-number=ec-4.2.1.75}}
−
{{#set: nb gene associated=2}}
+
{{#set: nb gene associated=1}}
−
{{#set: nb pathway associated=4}}
+
{{#set: nb pathway associated=2}}
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}

Revision as of 19:04, 14 January 2021

Reaction UROGENIIISYN-RXN

  • direction:
    • left-to-right
  • common-name:
    • uroporphyrinogen iii synthase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-5189, tetrapyrrole biosynthesis II (from glycine):
    • 3 reactions found over 4 reactions in the full pathway
  • PWY-5188, tetrapyrrole biosynthesis I (from glutamate):
    • 6 reactions found over 6 reactions in the full pathway

Reconstruction information

External links





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