Difference between revisions of "RXN-14280"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-8026 RXN-8026] == * direction: ** left-to-right * synonymous: ** crtz == Reaction formula == *...")
(Created page with "Category:reaction == Reaction DTDPDEHYDRHAMEPIM-RXN == * direction: ** left-to-right * common-name: ** dtdp-4-dehydrorhamnose 3,5-epimerase * ec-number: ** [http://enzyme....")
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[[Category:reaction]]
 
[[Category:reaction]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-8026 RXN-8026] ==
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== Reaction DTDPDEHYDRHAMEPIM-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
−
* synonymous:
+
* common-name:
−
** crtz
+
** dtdp-4-dehydrorhamnose 3,5-epimerase
 +
* ec-number:
 +
** [http://enzyme.expasy.org/EC/5.1.3.13 ec-5.1.3.13]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[CPD-7409]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c] '''+''' 2 [[PROTON]][c] '''+''' 2 [[Reduced-ferredoxins]][c] '''=>''' 1 [[CPD1F-130]][c] '''+''' 2 [[Oxidized-ferredoxins]][c] '''+''' 1 [[WATER]][c]
+
* 1 [[DTDP-DEOH-DEOXY-GLUCOSE]][c] '''=>''' 1 [[DTDP-DEOH-DEOXY-MANNOSE]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ07227]]
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* Gene: [[SJ22556]]
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** Category: [[manual]]
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** Category: [[annotation]]
−
*** Source: [[sjap]], Tool: [[unknown-tool]], Assignment: n.a, Comment: transformation of diatoxanthin into diadinoxanthin (second cycle of xanthophylls)
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
* Gene: [[SJ07228]]
 
−
** Category: [[manual]]
 
−
*** Source: [[sjap]], Tool: [[unknown-tool]], Assignment: n.a, Comment: transformation of diatoxanthin into diadinoxanthin (second cycle of xanthophylls)
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-7638]], echinenone and zeaxanthin biosynthesis (Synechocystis): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7638 PWY-7638]
+
* [[DTDPRHAMSYN-PWY]], dTDP-L-rhamnose biosynthesis:
−
** '''2''' reactions found over '''4''' reactions in the full pathway
+
** '''3''' reactions found over '''4''' reactions in the full pathway
−
* [[PWY-5944]], zeaxanthin biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5944 PWY-5944]
+
* [[PWY-7301]], dTDP-4-O-demethyl-β-L-noviose biosynthesis:
−
** '''2''' reactions found over '''2''' reactions in the full pathway
+
** '''2''' reactions found over '''5''' reactions in the full pathway
−
* [[PWY-5288]], astaxanthin biosynthesis (bacteria, fungi, algae): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5288 PWY-5288]
+
* [[PWY-7814]], dTDP-L-daunosamine biosynthesis:
−
** '''2''' reactions found over '''10''' reactions in the full pathway
+
** '''2''' reactions found over '''6''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[manual]]; source: [[sjap]]; tool: [[curation]]; comment: transformation of beta carotene into zeaxanthin (with beta cryptoxanthin as an intermediate)
+
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=16969 16969]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R07559 R07559]
+
** [http://www.genome.jp/dbget-bin/www_bget?R06514 R06514]
−
* RHEA:
+
* UNIPROT:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=30330 30330]
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** [http://www.uniprot.org/uniprot/Q9JWX1 Q9JWX1]
 +
** [http://www.uniprot.org/uniprot/Q9JWW7 Q9JWW7]
 +
** [http://www.uniprot.org/uniprot/Q9UZG9 Q9UZG9]
 +
** [http://www.uniprot.org/uniprot/P37745 P37745]
 +
** [http://www.uniprot.org/uniprot/Q7M0V5 Q7M0V5]
 +
** [http://www.uniprot.org/uniprot/P37763 P37763]
 +
** [http://www.uniprot.org/uniprot/Q46770 Q46770]
 +
** [http://www.uniprot.org/uniprot/P29783 P29783]
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: synonymous=crtz}}
+
{{#set: common-name=dtdp-4-dehydrorhamnose 3,5-epimerase}}
−
{{#set: nb gene associated=2}}
+
{{#set: ec-number=ec-5.1.3.13}}
 +
{{#set: nb gene associated=1}}
 
{{#set: nb pathway associated=3}}
 
{{#set: nb pathway associated=3}}
−
{{#set: reconstruction category=manual}}
+
{{#set: reconstruction category=annotation}}
−
{{#set: reconstruction tool=curation}}
+
{{#set: reconstruction tool=pathwaytools}}
−
{{#set: reconstruction comment=transformation of beta carotene into zeaxanthin (with beta cryptoxanthin as an intermediate)}}
+
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=sjap}}
+
{{#set: reconstruction source=saccharina_japonica_genome}}

Revision as of 20:39, 18 December 2020

Reaction DTDPDEHYDRHAMEPIM-RXN

  • direction:
    • left-to-right
  • common-name:
    • dtdp-4-dehydrorhamnose 3,5-epimerase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • DTDPRHAMSYN-PWY, dTDP-L-rhamnose biosynthesis:
    • 3 reactions found over 4 reactions in the full pathway
  • PWY-7301, dTDP-4-O-demethyl-β-L-noviose biosynthesis:
    • 2 reactions found over 5 reactions in the full pathway
  • PWY-7814, dTDP-L-daunosamine biosynthesis:
    • 2 reactions found over 6 reactions in the full pathway

Reconstruction information

External links





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