Difference between revisions of "RXN-14281"

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(Created page with "Category:reaction == Reaction 3.2.1.23-RXN == * direction: ** left-to-right * common-name: ** β-galactosidase ** beta-galactosidase * ec-number: ** [http://enzyme.exp...")
(Created page with "Category:reaction == Reaction RXN-9535 == * direction: ** left-to-right * common-name: ** fatty acid synthase * ec-number: ** [http://enzyme.expasy.org/EC/2.3.1.179 ec-2.3...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction 3.2.1.23-RXN ==
+
== Reaction RXN-9535 ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** β-galactosidase
+
** fatty acid synthase
−
** beta-galactosidase
 
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/3.2.1.23 ec-3.2.1.23]
+
** [http://enzyme.expasy.org/EC/2.3.1.179 ec-2.3.1.179]
 +
** [http://enzyme.expasy.org/EC/2.3.1.41 ec-2.3.1.41]
 +
** [http://enzyme.expasy.org/EC/2.3.1.85 ec-2.3.1.85]
 +
** [http://enzyme.expasy.org/EC/2.3.1.86 ec-2.3.1.86]
 +
* synonymous:
 +
** 3-oxoacyl-[acyl-carrier-protein] synthase
 +
** β-ketoacyl acyl carrier protein synthase
 +
** condensing enzyme
 +
** β-ketoacyl-acyl carrier protein synthetase
 +
** acyl-[acyl-carrier-protein]:malonyl-[acyl-carrier-protein] c-acyltransferase (decarboxylating)
 +
** β-ketoacyl-[acyl carrier protein] synthase
 +
** β-ketoacyl-acp synthase i
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[Beta-D-Galactosides]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[D-galactopyranose]][c] '''+''' 1 [[Non-Galactosylated-Galactose-Acceptors]][c]
+
* 1 [[Dodecanoyl-ACPs]][c] '''+''' 1 [[MALONYL-ACP]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[3-oxo-myristoyl-ACPs]][c] '''+''' 1 [[ACP]][c] '''+''' 1 [[CARBON-DIOXIDE]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ04558]]
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* Gene: [[SJ15984]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ17743]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ06616]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ03883]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ00005]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ06617]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ00613]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ18059]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ13014]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ04769]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
* Gene: [[SJ14193]]
+
* Gene: [[SJ10624]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
* Gene: [[SJ03139]]
+
* Gene: [[SJ00320]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ15983]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ10277]]
+
* Gene: [[SJ06944]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ11672]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ19629]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ04443]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
</div>
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 +
* [[PWY-5971]], palmitate biosynthesis II (bacteria and plant cytoplasm):
 +
** '''31''' reactions found over '''31''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/P06219 P06219]
 
−
** [http://www.uniprot.org/uniprot/P11175 P11175]
 
−
** [http://www.uniprot.org/uniprot/P19668 P19668]
 
−
** [http://www.uniprot.org/uniprot/P20043 P20043]
 
−
** [http://www.uniprot.org/uniprot/P16278 P16278]
 
−
** [http://www.uniprot.org/uniprot/P23780 P23780]
 
−
** [http://www.uniprot.org/uniprot/P24131 P24131]
 
−
** [http://www.uniprot.org/uniprot/Q02603 Q02603]
 
−
** [http://www.uniprot.org/uniprot/Q53790 Q53790]
 
−
** [http://www.uniprot.org/uniprot/P23989 P23989]
 
−
** [http://www.uniprot.org/uniprot/P48982 P48982]
 
−
** [http://www.uniprot.org/uniprot/Q9UYG5 Q9UYG5]
 
−
** [http://www.uniprot.org/uniprot/Q02604 Q02604]
 
−
** [http://www.uniprot.org/uniprot/P0AC73 P0AC73]
 
−
** [http://www.uniprot.org/uniprot/O58247 O58247]
 
−
** [http://www.uniprot.org/uniprot/Q9UYH2 Q9UYH2]
 
−
** [http://www.uniprot.org/uniprot/P00722 P00722]
 
−
** [http://www.uniprot.org/uniprot/P06864 P06864]
 
−
** [http://www.uniprot.org/uniprot/Q47170 Q47170]
 
−
** [http://www.uniprot.org/uniprot/Q59140 Q59140]
 
−
** [http://www.uniprot.org/uniprot/P00723 P00723]
 
−
** [http://www.uniprot.org/uniprot/P94248 P94248]
 
−
** [http://www.uniprot.org/uniprot/O31341 O31341]
 
−
** [http://www.uniprot.org/uniprot/P22498 P22498]
 
−
** [http://www.uniprot.org/uniprot/Q02401 Q02401]
 
−
** [http://www.uniprot.org/uniprot/P26257 P26257]
 
−
** [http://www.uniprot.org/uniprot/Q59422 Q59422]
 
−
** [http://www.uniprot.org/uniprot/P30812 P30812]
 
−
** [http://www.uniprot.org/uniprot/Q12660 Q12660]
 
−
** [http://www.uniprot.org/uniprot/P45582 P45582]
 
−
** [http://www.uniprot.org/uniprot/P49676 P49676]
 
−
** [http://www.uniprot.org/uniprot/Q9SCV3 Q9SCV3]
 
−
** [http://www.uniprot.org/uniprot/Q9SZI5 Q9SZI5]
 
−
** [http://www.uniprot.org/uniprot/O81100 O81100]
 
−
** [http://www.uniprot.org/uniprot/Q42150 Q42150]
 
−
** [http://www.uniprot.org/uniprot/P48980 P48980]
 
−
** [http://www.uniprot.org/uniprot/P48981 P48981]
 
−
** [http://www.uniprot.org/uniprot/O86616 O86616]
 
−
** [http://www.uniprot.org/uniprot/P70753 P70753]
 
−
** [http://www.uniprot.org/uniprot/P29853 P29853]
 
−
** [http://www.uniprot.org/uniprot/P94804 P94804]
 
−
</div>
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=&beta;-galactosidase|beta-galactosidase}}
+
{{#set: common-name=fatty acid synthase}}
−
{{#set: ec-number=ec-3.2.1.23}}
+
{{#set: ec-number=ec-2.3.1.41|ec-2.3.1.179|ec-2.3.1.85|ec-2.3.1.86}}
−
{{#set: nb gene associated=4}}
+
{{#set: synonymous=3-oxoacyl-[acyl-carrier-protein] synthase|&beta;-ketoacyl-acp synthase i|&beta;-ketoacyl acyl carrier protein synthase|condensing enzyme|&beta;-ketoacyl-acyl carrier protein synthetase|&beta;-ketoacyl-[acyl carrier protein] synthase|acyl-[acyl-carrier-protein]:malonyl-[acyl-carrier-protein] c-acyltransferase (decarboxylating)}}
−
{{#set: nb pathway associated=0}}
+
{{#set: nb gene associated=17}}
 +
{{#set: nb pathway associated=1}}
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction category=annotation|orthology}}
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}

Revision as of 15:05, 5 January 2021

Reaction RXN-9535

  • direction:
    • left-to-right
  • common-name:
    • fatty acid synthase
  • ec-number:
  • synonymous:
    • 3-oxoacyl-[acyl-carrier-protein] synthase
    • β-ketoacyl acyl carrier protein synthase
    • condensing enzyme
    • β-ketoacyl-acyl carrier protein synthetase
    • acyl-[acyl-carrier-protein]:malonyl-[acyl-carrier-protein] c-acyltransferase (decarboxylating)
    • β-ketoacyl-[acyl carrier protein] synthase
    • β-ketoacyl-acp synthase i

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-5971, palmitate biosynthesis II (bacteria and plant cytoplasm):
    • 31 reactions found over 31 reactions in the full pathway

Reconstruction information

External links

  • Property "Synonymous" (as page type) with input value "3-oxoacyl-[acyl-carrier-protein] synthase" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
  • Property "Synonymous" (as page type) with input value "β-ketoacyl-[acyl carrier protein] synthase" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
  • Property "Synonymous" (as page type) with input value "acyl-[acyl-carrier-protein]:malonyl-[acyl-carrier-protein] c-acyltransferase (decarboxylating)" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.




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