Difference between revisions of "RXN-14484"

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(Created page with "Category:reaction == Reaction ACETOLACTSYN-RXN == * direction: ** left-to-right * ec-number: ** [http://enzyme.expasy.org/EC/2.2.1.6 ec-2.2.1.6] == Reaction formula == * 1...")
(Created page with "Category:reaction == Reaction PORPHOBILSYNTH-RXN == * direction: ** left-to-right * common-name: ** porphobilinogen synthase * ec-number: ** [http://enzyme.expasy.org/EC/4...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction ACETOLACTSYN-RXN ==
+
== Reaction PORPHOBILSYNTH-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 +
* common-name:
 +
** porphobilinogen synthase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.2.1.6 ec-2.2.1.6]
+
** [http://enzyme.expasy.org/EC/4.2.1.24 ec-4.2.1.24]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[PROTON]][c] '''+''' 2 [[PYRUVATE]][c] '''=>''' 1 [[2-ACETO-LACTATE]][c] '''+''' 1 [[CARBON-DIOXIDE]][c]
+
* 2 [[5-AMINO-LEVULINATE]][c] '''=>''' 1 [[PORPHOBILINOGEN]][c] '''+''' 1 [[PROTON]][c] '''+''' 2 [[WATER]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
 +
* Gene: [[SJ07541]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ07531]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-6389]], pyruvate fermentation to (S)-acetoin:
+
* [[PWY-5188]], tetrapyrrole biosynthesis I (from glutamate):
−
** '''1''' reactions found over '''3''' reactions in the full pathway
+
** '''6''' reactions found over '''6''' reactions in the full pathway
−
* [[PWY-5939]], pyruvate fermentation to (R)-acetoin II:
+
* [[PWY-5189]], tetrapyrrole biosynthesis II (from glycine):
−
** '''1''' reactions found over '''2''' reactions in the full pathway
+
** '''3''' reactions found over '''4''' reactions in the full pathway
−
* [[PWY-5938]], pyruvate fermentation to (R)-acetoin I:
 
−
** '''1''' reactions found over '''3''' reactions in the full pathway
 
−
* [[VALSYN-PWY]], L-valine biosynthesis:
 
−
** '''4''' reactions found over '''4''' reactions in the full pathway
 
−
* [[PWY-7111]], pyruvate fermentation to isobutanol (engineered):
 
−
** '''4''' reactions found over '''5''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[gap-filling]]; source: [[gapfilling_solution_with_meneco_draft_medium]]; tool: [[meneco]]; comment: added for gapfilling
+
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=20504 20504]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=24064 24064]
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=25249 25249]
 
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R00226 R00226]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00036 R00036]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/Q59950 Q59950]
+
** [http://www.uniprot.org/uniprot/P06214 P06214]
−
** [http://www.uniprot.org/uniprot/P42463 P42463]
+
** [http://www.uniprot.org/uniprot/P13716 P13716]
−
** [http://www.uniprot.org/uniprot/Q8XAV3 Q8XAV3]
+
** [http://www.uniprot.org/uniprot/Q7M315 Q7M315]
−
** [http://www.uniprot.org/uniprot/P27868 P27868]
+
** [http://www.uniprot.org/uniprot/P30124 P30124]
−
** [http://www.uniprot.org/uniprot/P45260 P45260]
+
** [http://www.uniprot.org/uniprot/Q9JV37 Q9JV37]
−
** [http://www.uniprot.org/uniprot/Q57625 Q57625]
+
** [http://www.uniprot.org/uniprot/P30950 P30950]
−
** [http://www.uniprot.org/uniprot/P37251 P37251]
+
** [http://www.uniprot.org/uniprot/Q60178 Q60178]
−
** [http://www.uniprot.org/uniprot/P45261 P45261]
+
** [http://www.uniprot.org/uniprot/Q9PNU5 Q9PNU5]
−
** [http://www.uniprot.org/uniprot/O27493 O27493]
+
** [http://www.uniprot.org/uniprot/Q59295 Q59295]
−
** [http://www.uniprot.org/uniprot/O66759 O66759]
+
** [http://www.uniprot.org/uniprot/Q02250 Q02250]
−
** [http://www.uniprot.org/uniprot/Q9PHU2 Q9PHU2]
+
** [http://www.uniprot.org/uniprot/P10518 P10518]
−
** [http://www.uniprot.org/uniprot/O05031 O05031]
+
** [http://www.uniprot.org/uniprot/Q43148 Q43148]
−
** [http://www.uniprot.org/uniprot/Q57725 Q57725]
+
** [http://www.uniprot.org/uniprot/Q42682 Q42682]
−
** [http://www.uniprot.org/uniprot/Q9PHU1 Q9PHU1]
+
** [http://www.uniprot.org/uniprot/Q43058 Q43058]
−
** [http://www.uniprot.org/uniprot/Q9JTI1 Q9JTI1]
+
** [http://www.uniprot.org/uniprot/Q59643 Q59643]
−
** [http://www.uniprot.org/uniprot/Q58077 Q58077]
+
** [http://www.uniprot.org/uniprot/Q9S8B1 Q9S8B1]
−
** [http://www.uniprot.org/uniprot/O28554 O28554]
+
** [http://www.uniprot.org/uniprot/P05373 P05373]
−
** [http://www.uniprot.org/uniprot/O53554 O53554]
+
** [http://www.uniprot.org/uniprot/P0ACB2 P0ACB2]
−
** [http://www.uniprot.org/uniprot/Q04789 Q04789]
+
** [http://www.uniprot.org/uniprot/Q42836 Q42836]
−
** [http://www.uniprot.org/uniprot/Q9JRF4 Q9JRF4]
+
** [http://www.uniprot.org/uniprot/P43210 P43210]
−
** [http://www.uniprot.org/uniprot/Q59272 Q59272]
+
** [http://www.uniprot.org/uniprot/Q9ZNC9 Q9ZNC9]
−
** [http://www.uniprot.org/uniprot/P27696 P27696]
 
−
** [http://www.uniprot.org/uniprot/Q59498 Q59498]
 
−
** [http://www.uniprot.org/uniprot/Q9RFQ7 Q9RFQ7]
 
−
** [http://www.uniprot.org/uniprot/Q05767 Q05767]
 
−
** [http://www.uniprot.org/uniprot/P40811 P40811]
 
−
** [http://www.uniprot.org/uniprot/P21622 P21622]
 
−
** [http://www.uniprot.org/uniprot/P27818 P27818]
 
−
** [http://www.uniprot.org/uniprot/Q41768 Q41768]
 
−
** [http://www.uniprot.org/uniprot/Q41769 Q41769]
 
−
** [http://www.uniprot.org/uniprot/P69684 P69684]
 
−
** [http://www.uniprot.org/uniprot/P27819 P27819]
 
−
** [http://www.uniprot.org/uniprot/Q9R586 Q9R586]
 
−
** [http://www.uniprot.org/uniprot/Q02137 Q02137]
 
−
** [http://www.uniprot.org/uniprot/Q02140 Q02140]
 
−
** [http://www.uniprot.org/uniprot/P36620 P36620]
 
−
** [http://www.uniprot.org/uniprot/Q42767 Q42767]
 
−
** [http://www.uniprot.org/uniprot/Q42768 Q42768]
 
−
** [http://www.uniprot.org/uniprot/Q49865 Q49865]
 
−
** [http://www.uniprot.org/uniprot/O22547 O22547]
 
−
** [http://www.uniprot.org/uniprot/O49229 O49229]
 
−
** [http://www.uniprot.org/uniprot/O22578 O22578]
 
−
** [http://www.uniprot.org/uniprot/O49210 O49210]
 
−
** [http://www.uniprot.org/uniprot/Q60021 Q60021]
 
−
** [http://www.uniprot.org/uniprot/P07342 P07342]
 
−
** [http://www.uniprot.org/uniprot/P00892 P00892]
 
−
** [http://www.uniprot.org/uniprot/P08142 P08142]
 
−
** [http://www.uniprot.org/uniprot/P0ADF8 P0ADF8]
 
−
** [http://www.uniprot.org/uniprot/P00894 P00894]
 
−
** [http://www.uniprot.org/uniprot/P00893 P00893]
 
−
** [http://www.uniprot.org/uniprot/P17597 P17597]
 
−
** [http://www.uniprot.org/uniprot/P09342 P09342]
 
−
** [http://www.uniprot.org/uniprot/P09114 P09114]
 
−
** [http://www.uniprot.org/uniprot/P14874 P14874]
 
 
</div>
 
</div>
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: ec-number=ec-2.2.1.6}}
+
{{#set: common-name=porphobilinogen synthase}}
−
{{#set: nb gene associated=0}}
+
{{#set: ec-number=ec-4.2.1.24}}
−
{{#set: nb pathway associated=5}}
+
{{#set: nb gene associated=2}}
−
{{#set: reconstruction category=gap-filling}}
+
{{#set: nb pathway associated=2}}
−
{{#set: reconstruction tool=meneco}}
+
{{#set: reconstruction category=annotation|orthology}}
−
{{#set: reconstruction comment=added for gapfilling}}
+
{{#set: reconstruction tool=pathwaytools|pantograph}}
−
{{#set: reconstruction source=gapfilling_solution_with_meneco_draft_medium}}
+
{{#set: reconstruction comment=n.a}}
 +
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}

Revision as of 19:02, 14 January 2021

Reaction PORPHOBILSYNTH-RXN

  • direction:
    • left-to-right
  • common-name:
    • porphobilinogen synthase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-5188, tetrapyrrole biosynthesis I (from glutamate):
    • 6 reactions found over 6 reactions in the full pathway
  • PWY-5189, tetrapyrrole biosynthesis II (from glycine):
    • 3 reactions found over 4 reactions in the full pathway

Reconstruction information

External links





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