Difference between revisions of "RXN-14484"

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(Created page with "Category:reaction == Reaction SUCCINATE--COA-LIGASE-GDP-FORMING-RXN == * direction: ** reversible * common-name: ** succinate-coa ligase * ec-number: ** [http://enzyme.exp...")
(Created page with "Category:reaction == Reaction RXN-5341 == * direction: ** left-to-right * common-name: ** beta-glucosidase ** linamarase (β-glucosidase) * ec-number: ** [http://enzym...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction SUCCINATE--COA-LIGASE-GDP-FORMING-RXN ==
+
== Reaction RXN-5341 ==
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
 
* common-name:
 
* common-name:
−
** succinate-coa ligase
+
** beta-glucosidase
 +
** linamarase (β-glucosidase)
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/6.2.1.4 ec-6.2.1.4]
+
** [http://enzyme.expasy.org/EC/3.2.1.21 ec-3.2.1.21]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[CO-A]][c] '''+''' 1 [[GTP]][c] '''+''' 1 [[SUC]][c] '''<=>''' 1 [[GDP]][c] '''+''' 1 [[Pi]][c] '''+''' 1 [[SUC-COA]][c]
+
* 1 [[LINAMARIN]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[2-HYDROXY-2-METHYLPROPANENITRILE]][c] '''+''' 1 [[Glucopyranose]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ03269]]
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* Gene: [[SJ18897]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ00855]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ14193]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ05740]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ04558]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ05782]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ05741]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ04559]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ05257]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ17199]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ21782]]
+
* Gene: [[SJ14973]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ11958]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ19930]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ16402]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ18318]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ05532]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ05533]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
</div>
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY66-398]], TCA cycle III (animals):
+
* [[PWY-3121]], linamarin degradation:
−
** '''10''' reactions found over '''10''' reactions in the full pathway
+
** '''1''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-7091]], linustatin bioactivation:
 +
** '''2''' reactions found over '''4''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
{{#set: direction=left-to-right}}
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22123 22123]
+
{{#set: common-name=beta-glucosidase|linamarase (&beta;-glucosidase)}}
−
* LIGAND-RXN:
+
{{#set: ec-number=ec-3.2.1.21}}
−
** [http://www.genome.jp/dbget-bin/www_bget?R00432 R00432]
+
{{#set: nb gene associated=17}}
−
* UNIPROT:
+
{{#set: nb pathway associated=2}}
−
** [http://www.uniprot.org/uniprot/Q03184 Q03184]
 
−
** [http://www.uniprot.org/uniprot/O08371 O08371]
 
−
** [http://www.uniprot.org/uniprot/O84829 O84829]
 
−
** [http://www.uniprot.org/uniprot/Q8LAD2 Q8LAD2]
 
−
** [http://www.uniprot.org/uniprot/P53587 P53587]
 
−
** [http://www.uniprot.org/uniprot/P53312 P53312]
 
−
** [http://www.uniprot.org/uniprot/P36967 P36967]
 
−
** [http://www.uniprot.org/uniprot/P13086 P13086]
 
−
** [http://www.uniprot.org/uniprot/Q9Y436 Q9Y436]
 
−
** [http://www.uniprot.org/uniprot/P68209 P68209]
 
−
{{#set: direction=reversible}}
 
−
{{#set: common-name=succinate-coa ligase}}
 
−
{{#set: ec-number=ec-6.2.1.4}}
 
−
{{#set: nb gene associated=2}}
 
−
{{#set: nb pathway associated=1}}
 
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction category=annotation|orthology}}
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
 
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}

Revision as of 15:02, 5 January 2021

Reaction RXN-5341

  • direction:
    • left-to-right
  • common-name:
    • beta-glucosidase
    • linamarase (β-glucosidase)
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-3121, linamarin degradation:
    • 1 reactions found over 2 reactions in the full pathway
  • PWY-7091, linustatin bioactivation:
    • 2 reactions found over 4 reactions in the full pathway

Reconstruction information

External links

Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=RXN-14484&oldid=62849"