Difference between revisions of "RXN-14727"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-901 RXN0-901] == * direction: ** reversible * common-name: ** xanthine:nad+ oxidoreductase * e...")
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=THREONINE--TRNA-LIGASE-RXN THREONINE--TRNA-LIGASE-RXN] == * direction: ** left-to-right * common-na...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-901 RXN0-901] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=THREONINE--TRNA-LIGASE-RXN THREONINE--TRNA-LIGASE-RXN] ==
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
 
* common-name:
 
* common-name:
−
** xanthine:nad+ oxidoreductase
+
** threonine-trna ligase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/1.17.1.4 ec-1.17.1.4]
+
** [http://enzyme.expasy.org/EC/6.1.1.3 ec-6.1.1.3]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[NAD]][c] '''+''' 1 [[WATER]][c] '''+''' 1 [[XANTHINE]][c] '''<=>''' 1 [[NADH]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[URATE]][c]
+
* 1 [[ATP]][c] '''+''' 1 [[THR]][c] '''+''' 1 [[THR-tRNAs]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[Charged-THR-tRNAs]][c] '''+''' 1 [[PPI]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* Gene: [[SJ03199]]
−
* Gene: [[SJ13098]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ13101]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ05673]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ05660]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ05674]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ13100]]
+
* Gene: [[SJ20100]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ05668]]
+
* Gene: [[SJ17482]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ13095]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
</div>
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* [[TRNA-CHARGING-PWY]], tRNA charging: [http://metacyc.org/META/NEW-IMAGE?object=TRNA-CHARGING-PWY TRNA-CHARGING-PWY]
−
* [[PWY-5497]], purine nucleobases degradation II (anaerobic): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5497 PWY-5497]
+
** '''21''' reactions found over '''21''' reactions in the full pathway
−
** '''10''' reactions found over '''24''' reactions in the full pathway
 
−
* [[P164-PWY]], purine nucleobases degradation I (anaerobic): [http://metacyc.org/META/NEW-IMAGE?object=P164-PWY P164-PWY]
 
−
** '''6''' reactions found over '''17''' reactions in the full pathway
 
−
* [[PWY-6596]], adenosine nucleotides degradation I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6596 PWY-6596]
 
−
** '''7''' reactions found over '''8''' reactions in the full pathway
 
−
* [[PWY-6606]], guanosine nucleotides degradation II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6606 PWY-6606]
 
−
** '''4''' reactions found over '''4''' reactions in the full pathway
 
−
* [[PWY-6607]], guanosine nucleotides degradation I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6607 PWY-6607]
 
−
** '''3''' reactions found over '''4''' reactions in the full pathway
 
−
* [[PWY-6999]], theophylline degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6999 PWY-6999]
 
−
** '''2''' reactions found over '''9''' reactions in the full pathway
 
−
* [[PWY-6608]], guanosine nucleotides degradation III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6608 PWY-6608]
 
−
** '''4''' reactions found over '''4''' reactions in the full pathway
 
−
* [[PWY-6538]], caffeine degradation III (bacteria, via demethylation): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6538 PWY-6538]
 
−
** '''2''' reactions found over '''7''' reactions in the full pathway
 
−
* [[PWY-5695]], inosine 5'-phosphate degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5695 PWY-5695]
 
−
** '''4''' reactions found over '''4''' reactions in the full pathway
 
−
* [[SALVADEHYPOX-PWY]], adenosine nucleotides degradation II: [http://metacyc.org/META/NEW-IMAGE?object=SALVADEHYPOX-PWY SALVADEHYPOX-PWY]
 
−
** '''5''' reactions found over '''5''' reactions in the full pathway
 
−
</div>
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
 +
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=16672 16672]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=24625 24625]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R02103 R02103]
+
** [http://www.genome.jp/dbget-bin/www_bget?R03663 R03663]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/Q62637 Q62637]
+
** [http://www.uniprot.org/uniprot/O83809 O83809]
−
** [http://www.uniprot.org/uniprot/P22811 P22811]
+
** [http://www.uniprot.org/uniprot/Q9JVA3 Q9JVA3]
−
** [http://www.uniprot.org/uniprot/Q12553 Q12553]
+
** [http://www.uniprot.org/uniprot/P56071 P56071]
−
** [http://www.uniprot.org/uniprot/P08793 P08793]
+
** [http://www.uniprot.org/uniprot/O58430 O58430]
−
** [http://www.uniprot.org/uniprot/P10351 P10351]
+
** [http://www.uniprot.org/uniprot/P47615 P47615]
−
** [http://www.uniprot.org/uniprot/Q7M0I7 Q7M0I7]
+
** [http://www.uniprot.org/uniprot/O05947 O05947]
−
** [http://www.uniprot.org/uniprot/Q7M0I8 Q7M0I8]
+
** [http://www.uniprot.org/uniprot/Q9PIS3 Q9PIS3]
−
** [http://www.uniprot.org/uniprot/Q7M0I9 Q7M0I9]
+
** [http://www.uniprot.org/uniprot/O67583 O67583]
−
** [http://www.uniprot.org/uniprot/P47990 P47990]
+
** [http://www.uniprot.org/uniprot/O27504 O27504]
−
** [http://www.uniprot.org/uniprot/P47989 P47989]
+
** [http://www.uniprot.org/uniprot/O51662 O51662]
−
** [http://www.uniprot.org/uniprot/Q00519 Q00519]
+
** [http://www.uniprot.org/uniprot/Q9ZMV3 Q9ZMV3]
−
{{#set: direction=reversible}}
+
** [http://www.uniprot.org/uniprot/Q9Z7A0 Q9Z7A0]
−
{{#set: common-name=xanthine:nad+ oxidoreductase}}
+
** [http://www.uniprot.org/uniprot/Q9WZJ9 Q9WZJ9]
−
{{#set: ec-number=ec-1.17.1.4}}
+
** [http://www.uniprot.org/uniprot/Q9CED2 Q9CED2]
−
{{#set: nb gene associated=8}}
+
** [http://www.uniprot.org/uniprot/P43014 P43014]
−
{{#set: nb pathway associated=10}}
+
** [http://www.uniprot.org/uniprot/P46244 P46244]
−
{{#set: reconstruction category=orthology|annotation}}
+
** [http://www.uniprot.org/uniprot/P75225 P75225]
 +
** [http://www.uniprot.org/uniprot/Q48989 Q48989]
 +
** [http://www.uniprot.org/uniprot/P0A8M3 P0A8M3]
 +
** [http://www.uniprot.org/uniprot/O04630 O04630]
 +
** [http://www.uniprot.org/uniprot/P18255 P18255]
 +
** [http://www.uniprot.org/uniprot/P18256 P18256]
 +
** [http://www.uniprot.org/uniprot/P04801 P04801]
 +
** [http://www.uniprot.org/uniprot/P07236 P07236]
 +
** [http://www.uniprot.org/uniprot/P26639 P26639]
 +
</div>
 +
{{#set: direction=left-to-right}}
 +
{{#set: common-name=threonine-trna ligase}}
 +
{{#set: ec-number=ec-6.1.1.3}}
 +
{{#set: nb gene associated=3}}
 +
{{#set: nb pathway associated=1}}
 +
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_arabidopsis_thaliana|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}

Revision as of 09:31, 27 August 2019

Reaction THREONINE--TRNA-LIGASE-RXN

  • direction:
    • left-to-right
  • common-name:
    • threonine-trna ligase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links





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