Difference between revisions of "RXN-14728"
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(Created page with "Category:reaction == Reaction RIBULP3EPIM-RXN == * direction: ** reversible * common-name: ** ribulose-5-phosphate 3-epimerase * ec-number: ** [http://enzyme.expasy.org/EC...") |
(Created page with "Category:reaction == Reaction 1.5.1.20-RXN == * direction: ** left-to-right * common-name: ** 5,10-methylenetetrahydrofolate reductase ** methylenetetrahydrofolate reducta...") |
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Line 1: | Line 1: | ||
[[Category:reaction]] | [[Category:reaction]] | ||
− | == Reaction | + | == Reaction 1.5.1.20-RXN == |
* direction: | * direction: | ||
− | ** | + | ** left-to-right |
* common-name: | * common-name: | ||
− | ** | + | ** 5,10-methylenetetrahydrofolate reductase |
+ | ** methylenetetrahydrofolate reductase (nad(p)h) | ||
* ec-number: | * ec-number: | ||
− | ** [http://enzyme.expasy.org/EC/5.1. | + | ** [http://enzyme.expasy.org/EC/1.5.1.20 ec-1.5.1.20] |
== Reaction formula == | == Reaction formula == | ||
− | * 1 [[ | + | * 1 [[METHYLENE-THF-GLU-N]][c] '''+''' 1 [[NADH]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[5-METHYL-THF-GLU-N]][c] '''+''' 1 [[NAD]][c] |
== Gene(s) associated with this reaction == | == Gene(s) associated with this reaction == | ||
− | * Gene: [[ | + | * Gene: [[SJ09591]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
** Category: [[orthology]] | ** Category: [[orthology]] | ||
− | |||
− | |||
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
− | * Gene: [[ | + | * Gene: [[SJ00407]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
** Category: [[orthology]] | ** Category: [[orthology]] | ||
− | |||
− | |||
− | |||
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | * Gene: [[SJ19532]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a | ||
== Pathway(s) == | == Pathway(s) == | ||
− | * [[PWY | + | * [[1CMET2-PWY]], folate transformations III (E. coli): |
− | ** ''' | + | ** '''8''' reactions found over '''9''' reactions in the full pathway |
− | * [[ | + | * [[PWY-3841]], folate transformations II (plants): |
− | + | ** '''9''' reactions found over '''11''' reactions in the full pathway | |
− | + | * [[PWY-2201]], folate transformations I: | |
− | ** ''' | + | ** '''9''' reactions found over '''10''' reactions in the full pathway |
− | * [[PWY- | + | * [[CODH-PWY]], reductive acetyl coenzyme A pathway I (homoacetogenic bacteria): |
− | ** ''' | + | ** '''4''' reactions found over '''9''' reactions in the full pathway |
− | * [[ | ||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | ** ''' | ||
== Reconstruction information == | == Reconstruction information == | ||
− | * category: [[ | + | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a |
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | * category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
− | |||
− | |||
== External links == | == External links == | ||
− | |||
− | |||
* LIGAND-RXN: | * LIGAND-RXN: | ||
− | ** [http://www.genome.jp/dbget-bin/www_bget? | + | ** [http://www.genome.jp/dbget-bin/www_bget?R07168 R07168] |
* UNIPROT: | * UNIPROT: | ||
− | ** [http://www.uniprot.org/uniprot/ | + | ** [http://www.uniprot.org/uniprot/Q9PN93 Q9PN93] |
− | ** [http://www.uniprot.org/uniprot/ | + | ** [http://www.uniprot.org/uniprot/Q9JUT7 Q9JUT7] |
− | ** [http://www.uniprot.org/uniprot/ | + | ** [http://www.uniprot.org/uniprot/P45208 P45208] |
− | ** [http://www.uniprot.org/uniprot/ | + | ** [http://www.uniprot.org/uniprot/P0AEZ1 P0AEZ1] |
− | ** [http://www.uniprot.org/uniprot/ | + | ** [http://www.uniprot.org/uniprot/P11003 P11003] |
− | ** [http://www.uniprot.org/uniprot/ | + | ** [http://www.uniprot.org/uniprot/P46151 P46151] |
− | ** [http://www.uniprot.org/uniprot/ | + | ** [http://www.uniprot.org/uniprot/P53128 P53128] |
− | + | {{#set: direction=left-to-right}} | |
− | + | {{#set: common-name=5,10-methylenetetrahydrofolate reductase|methylenetetrahydrofolate reductase (nad(p)h)}} | |
− | + | {{#set: ec-number=ec-1.5.1.20}} | |
− | + | {{#set: nb gene associated=3}} | |
− | {{#set: direction= | + | {{#set: nb pathway associated=4}} |
− | {{#set: common-name= | ||
− | {{#set: ec-number=ec-5.1. | ||
− | {{#set: nb gene associated= | ||
− | {{#set: nb pathway associated= | ||
{{#set: reconstruction category=annotation|orthology}} | {{#set: reconstruction category=annotation|orthology}} | ||
{{#set: reconstruction tool=pathwaytools|pantograph}} | {{#set: reconstruction tool=pathwaytools|pantograph}} | ||
{{#set: reconstruction comment=n.a}} | {{#set: reconstruction comment=n.a}} | ||
− | {{#set: reconstruction source= | + | {{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}} |
Revision as of 11:26, 15 January 2021
Contents
Reaction 1.5.1.20-RXN
- direction:
- left-to-right
- common-name:
- 5,10-methylenetetrahydrofolate reductase
- methylenetetrahydrofolate reductase (nad(p)h)
- ec-number:
Reaction formula
- 1 METHYLENE-THF-GLU-N[c] + 1 NADH[c] + 1 PROTON[c] => 1 5-METHYL-THF-GLU-N[c] + 1 NAD[c]
Gene(s) associated with this reaction
- Gene: SJ09591
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
- Gene: SJ00407
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
- Gene: SJ19532
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: annotation
Pathway(s)
- 1CMET2-PWY, folate transformations III (E. coli):
- 8 reactions found over 9 reactions in the full pathway
- PWY-3841, folate transformations II (plants):
- 9 reactions found over 11 reactions in the full pathway
- PWY-2201, folate transformations I:
- 9 reactions found over 10 reactions in the full pathway
- CODH-PWY, reductive acetyl coenzyme A pathway I (homoacetogenic bacteria):
- 4 reactions found over 9 reactions in the full pathway
Reconstruction information
- category: annotation; source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- category: orthology; source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
External links