Difference between revisions of "RXN-14728"

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(Created page with "Category:reaction == Reaction 1.5.1.20-RXN == * direction: ** left-to-right * common-name: ** 5,10-methylenetetrahydrofolate reductase ** methylenetetrahydrofolate reducta...")
(Created page with "Category:reaction == Reaction RXN-16017 == * direction: ** left-to-right * ec-number: ** [http://enzyme.expasy.org/EC/2.3.1 ec-2.3.1] == Reaction formula == * 1 ACETYL-C...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction 1.5.1.20-RXN ==
+
== Reaction RXN-16017 ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
−
* common-name:
 
−
** 5,10-methylenetetrahydrofolate reductase
 
−
** methylenetetrahydrofolate reductase (nad(p)h)
 
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/1.5.1.20 ec-1.5.1.20]
+
** [http://enzyme.expasy.org/EC/2.3.1 ec-2.3.1]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[METHYLENE-THF-GLU-N]][c] '''+''' 1 [[NADH]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[5-METHYL-THF-GLU-N]][c] '''+''' 1 [[NAD]][c]
+
* 1 [[ACETYL-COA]][c] '''+''' 10 [[MALONYL-COA]][c] '''+''' 14 [[NADPH]][c] '''+''' 23 [[PROTON]][c] '''=>''' 10 [[CARBON-DIOXIDE]][c] '''+''' 11 [[CO-A]][c] '''+''' 1 [[CPD-10244]][c] '''+''' 14 [[NADP]][c] '''+''' 9 [[WATER]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ09591]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ00407]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ19532]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[1CMET2-PWY]], folate transformations III (E. coli):
+
* [[PWY-7585]], docosahexaenoate biosynthesis II (bacteria):
−
** '''8''' reactions found over '''9''' reactions in the full pathway
+
** '''1''' reactions found over '''1''' reactions in the full pathway
−
* [[PWY-3841]], folate transformations II (plants):
 
−
** '''9''' reactions found over '''11''' reactions in the full pathway
 
−
* [[PWY-2201]], folate transformations I:
 
−
** '''9''' reactions found over '''10''' reactions in the full pathway
 
−
* [[CODH-PWY]], reductive acetyl coenzyme A pathway I (homoacetogenic bacteria):
 
−
** '''4''' reactions found over '''9''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
+
* category: [[gap-filling]]; source: [[gapfilling_solution_with_meneco_draft_medium]]; tool: [[meneco]]; comment: added for gapfilling
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
* LIGAND-RXN:
+
* METANETX-RXN : MNXR119774
−
** [http://www.genome.jp/dbget-bin/www_bget?R07168 R07168]
 
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/Q9PN93 Q9PN93]
 
−
** [http://www.uniprot.org/uniprot/Q9JUT7 Q9JUT7]
 
−
** [http://www.uniprot.org/uniprot/P45208 P45208]
 
−
** [http://www.uniprot.org/uniprot/P0AEZ1 P0AEZ1]
 
−
** [http://www.uniprot.org/uniprot/P11003 P11003]
 
−
** [http://www.uniprot.org/uniprot/P46151 P46151]
 
−
** [http://www.uniprot.org/uniprot/P53128 P53128]
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=5,10-methylenetetrahydrofolate reductase|methylenetetrahydrofolate reductase (nad(p)h)}}
+
{{#set: ec-number=ec-2.3.1}}
−
{{#set: ec-number=ec-1.5.1.20}}
+
{{#set: nb gene associated=0}}
−
{{#set: nb gene associated=3}}
+
{{#set: nb pathway associated=1}}
−
{{#set: nb pathway associated=4}}
+
{{#set: reconstruction category=gap-filling}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction tool=meneco}}
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
+
{{#set: reconstruction comment=added for gapfilling}}
−
{{#set: reconstruction comment=n.a}}
+
{{#set: reconstruction source=gapfilling_solution_with_meneco_draft_medium}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
 

Revision as of 08:38, 15 March 2021

Reaction RXN-16017

  • direction:
    • left-to-right
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-7585, docosahexaenoate biosynthesis II (bacteria):
    • 1 reactions found over 1 reactions in the full pathway

Reconstruction information

External links

  • METANETX-RXN : MNXR119774





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